Dipodomys merriami (Merriam's kangaroo rat): 138822713
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Entry
138822713 CDS
T11079
Name
(RefSeq) tRNA-splicing endonuclease subunit Sen2-like
KO
K15322
tRNA-splicing endonuclease subunit Sen2 [EC:
4.6.1.16
]
Organism
dmer Dipodomys merriami (Merriam's kangaroo rat)
Brite
KEGG Orthology (KO) [BR:
dmer00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dmer03016
]
138822713
Enzymes [BR:
dmer01000
]
4. Lyases
4.6 Phosphorus-oxygen lyases
4.6.1 Phosphorus-oxygen lyases (only sub-subclass identified to date)
4.6.1.16 tRNA-intron lyase
138822713
Transfer RNA biogenesis [BR:
dmer03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing endonuclease complex
138822713
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
tRNA_int_endo
tRNA_int_endo_N
Motif
Other DBs
NCBI-GeneID:
138822713
NCBI-ProteinID:
XP_069871691
LinkDB
All DBs
Position
Unknown
AA seq
443 aa
AA seq
DB search
MAEAVFHAPKRKRRVNESYESPLPIPFWQDPGPRQGCPQLRAELINSRVIVRRSEDMKQL
YRKGYFGKGVLSRSRPCFTGSDPKLVATWKDVKTRMPIITSKKYERRVEWATEVMRRQGQ
EESTVCEILKEFTKPLGHPCTGRSKKCEQCDARGSPVASTLCHTAEPQGPSVTNGDSGQR
GGHPDGLQESSGHDLLPAPPLEGPMVEETAALPREPLSTQSGHQPSGQRGSEPEYVLVEE
GVCDEQQEAGTPAEEWVHRQRLTCRRNPYRIFEYLQLSLEEAFFLAYALGCLSVHYEEEP
LTLVKLWRAFTAVQPTFRTTYMAYHHFRSKGWVPKVGLKYGTDLLLYRKGPPFYHASYSV
IVELVDDCFEGAPRRPFSWKSLAALSRVSASVSKELLLCYLVKPSTMTEEEMGSPECMKR
IKVQEVILSRWVSSRERSDPDEL
NT seq
1332 nt
NT seq
+upstream
nt +downstream
nt
atggcagaagcagtcttccatgccccaaagaggaaaagaagggtgaatgagagctatgag
tctccgttgcccatcccgttctggcaggaccccggtcccaggcagggatgcccacagctc
cgcgccgagctcatcaacagcagggtgatcgtgaggcgctcggaggacatgaagcagctg
tacaggaaaggctactttggaaaaggtgttctttccagaagccggccatgcttcacgggt
tcagatcctaagctggttgccacgtggaaagacgtgaagacacgcatgcctataatcacg
tcaaagaagtatgagcgtcgtgtagaatgggccacagaggtcatgcggagacaaggccag
gaggagagcacagtgtgcgagatcctcaaggagttcacaaaacctcttggacatccttgc
acagggaggagcaaaaagtgtgaacagtgcgatgcccgcggctccccggtcgcctccacc
ctgtgccacacagcagagccccagggcccttctgtgacgaatggagactctggacagcgg
ggtgggcaccctgatggcctgcaggagagctctggacacgacctgcttcctgcacccccc
ctcgagggacccatggtagaggaaacggcagctctgccccgagagcccctcagcacccag
agcggacatcagccatcaggacagagggggtccgagcctgaatacgtgctcgtggaagaa
ggcgtgtgtgatgagcagcaggaggcaggcaccccagcggaggaatgggtgcacaggcag
agattaacatgccggaggaatccatataggatctttgagtatctgcagctcagcctggag
gaggccttcttccttgcatatgccctgggatgcctgagtgttcactatgaggaggaacct
ttaacgcttgtgaagctctggcgcgcgttcaccgccgtgcagcccaccttcaggacaacg
tacatggcataccaccacttccgaagcaagggctgggtgcccaaggtggggctcaagtac
gggacggacctgttgctgtaccggaaaggccctccgttttaccatgcaagctactcggtg
atcgtggagctggttgatgactgctttgagggcgccccccgcaggccattcagctggaag
tccttggctgcgctgagcagagtgtcagccagtgtctccaaggagcttctgctgtgttac
ttggtgaagccctccaccatgactgaggaggaaatggggtccccggagtgcatgaagaga
attaaagttcaggaggtgatcctcagtcgctgggtttcttcacgagagagaagtgacccg
gatgaactttag
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