Dipodomys merriami (Merriam's kangaroo rat): 138822769
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Entry
138822769 CDS
T11079
Symbol
Col4a4
Name
(RefSeq) collagen alpha-4(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
dmer Dipodomys merriami (Merriam's kangaroo rat)
Pathway
dmer04151
PI3K-Akt signaling pathway
dmer04382
Cornified envelope formation
dmer04510
Focal adhesion
dmer04512
ECM-receptor interaction
dmer04820
Cytoskeleton in muscle cells
dmer04926
Relaxin signaling pathway
dmer04933
AGE-RAGE signaling pathway in diabetic complications
dmer04974
Protein digestion and absorption
dmer05146
Amoebiasis
dmer05165
Human papillomavirus infection
dmer05200
Pathways in cancer
dmer05222
Small cell lung cancer
Brite
KEGG Orthology (KO) [BR:
dmer00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
138822769 (Col4a4)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
138822769 (Col4a4)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
138822769 (Col4a4)
09142 Cell motility
04820 Cytoskeleton in muscle cells
138822769 (Col4a4)
09150 Organismal Systems
09152 Endocrine system
04926 Relaxin signaling pathway
138822769 (Col4a4)
09154 Digestive system
04974 Protein digestion and absorption
138822769 (Col4a4)
09158 Development and regeneration
04382 Cornified envelope formation
138822769 (Col4a4)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
138822769 (Col4a4)
09162 Cancer: specific types
05222 Small cell lung cancer
138822769 (Col4a4)
09172 Infectious disease: viral
05165 Human papillomavirus infection
138822769 (Col4a4)
09174 Infectious disease: parasitic
05146 Amoebiasis
138822769 (Col4a4)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
138822769 (Col4a4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
dmer04147
]
138822769 (Col4a4)
00536 Glycosaminoglycan binding proteins [BR:
dmer00536
]
138822769 (Col4a4)
Exosome [BR:
dmer04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
138822769 (Col4a4)
Glycosaminoglycan binding proteins [BR:
dmer00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
138822769 (Col4a4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
138822769
NCBI-ProteinID:
XP_069871811
LinkDB
All DBs
Position
Unknown
AA seq
1374 aa
AA seq
DB search
MKLFLRWTKPLLTDPWSLVLILFLVQHTCGTGKKYVGPCGGRDCSVCLCFPEKGSRGQPG
PLGPQGPIGPLGPPGPPGIPGEKGLRGDAGPPGAVGEKGDKGPTGIPGFPGLGGIPGHPG
PPGSRGKPGLNGYNGSRGDPGFPGERGVPGPGGPPGFPGERGEKGNSVFIAGAIKGTQGD
PGDPGPPGLPGSRGPPGPVGPRGYPGAAGLTGPPGHPGSPGLKGNPGVGVKGQMGDPGEV
GQQGSPGPTLLIEPPDASLYKGEKGIKGLPGMIGLPGPPGPKGEPGIGIKGEKGLPGFPG
PRGVPGSHGSPGFPGLKGEQGQIGEPGLFGLRGPKGDLGERGHPGPPGILVTPPVPLKGP
TGDPGCPGRQGEMGAIGPPGPPGPPGLPGVACPGIPGPPGPPGFPGPPGLPGEAGVPGKP
DSAPGKPGHPGPPGLPGAPGQPGPPGLDVIQCSVSYPGPPGIKGIMGPPGRRGSKGEKGN
QGLCACKPGPLGPPGAPGPHGRQGSKGDLGLPGWFGEKGDPGLPGAEGPPGPPGKPGALG
PPGFKGTKGDMVVARVKGIKGERGPDGPLGFPGQRGQHGQDGRDGETGEPGPPGGHEDAI
PGAKGFPGPPGPPGKPGPIGPPGLGYPGPPGERGKSGLPGRPGVRGPDGAKGQKGDTILC
NVTYLGKPGPPGFDGPPGLKGFPGPPGAPGQRCLDGQKGQRGKPGASKIPGPPGLRGNMG
DPGFEGEKGSSPSGPPGPPGRRGVDGQKGIPGESAFGHPGPPGNRGLPGVPGMKGARGHP
GCPGVEGAAGVPGSPGLKGPKGREGSPGFPGIPGPPGQSCRKGSAGIPGQPGLPGAPGSP
GAPGWKGQRGEAGPSGPAGMKGFPGPPGLPGADGFLGPPGIPGPLGEDGLPGLPGPKGPR
GLPGFPGFPGERGLPGQEGLPGRKGEIGQKGWPGFGGDQGVRGAKGTRGPPGAAGEMAIF
LKKGKAGEPGPPGENGFPGARGDKGSAGLQGRRGEPGQHGPPGLHRGEPGRNGEPGFPGP
PGPPGLPGLRGVIGFPGLPGDQGEPGFPGPRGFSGNDGGRGPKGIKGDPASLYGLPGPKG
KPGSLGCPGHVGAPGERGLPGEQGLRGPPGRPGPPGSMGPPGCPGEQGLPGLEGQPGDMG
DLGPRGLPGNPGIPGPPGVKGPAGSPGLNGLHGLKGEKGSKGASGLYEMGPPGPVGLPGI
KGERGDPGSPGISPPGPIGEKGFPGPPGPPGPPGPAGAPGRAPEGDIPEQGPSGDQGPPG
PDGPRGEPGPPGPPGSVDLLKGDPGDYGLPGAPGSPGPPGPPGCQGIPGCDGKDGQKGPM
GFPGPPGPPGFPGPPGEKGLPGPPGRKGPLGPPGKQLMYGQFLSNLKVAFCLNI
NT seq
4125 nt
NT seq
+upstream
nt +downstream
nt
atgaagctttttctgagatggaccaagcccttgctcacagatccatggtcacttgtactt
attctgtttttggtgcaacacacgtgcgggactggtaagaaatatgtcggtccttgtgga
ggaagagattgctcagtttgcttgtgttttcctgagaagggatctcggggccaaccagga
ccactgggacctcagggtcccatagggcccctgggacccccaggacccccagggattcca
ggagagaaaggtctaaggggtgacgccggccctcccggagccgtgggggagaaaggagac
aagggtccaactggcattcctgggtttccaggtttgggcggaatacctggtcatccaggg
cctcctggatcgagaggaaaacctggcttgaatggctacaatggatcaagaggtgatcct
ggattcccaggagaaaggggagtaccaggccctggaggcccccctggctttcctggagaa
cgtggtgaaaaaggaaattcagtgttcattgctggtgccattaaaggtactcagggagac
cccggggacccaggacctcctggcttaccaggatctaggggtccaccgggaccagtgggc
cccaggggctaccctggtgcagcggggctcacgggacctccgggtcatcctgggagccca
gggttgaagggcaatcctggtgtgggagtgaaagggcaaatgggagacccgggtgaagtt
ggccagcaaggttctcctggacccaccctattgatagaaccacctgatgcttctctctat
aaaggagaaaagggtataaaaggacttcctggaatgattggattaccaggaccaccagga
cccaagggagaacctggtattgggataaaaggagagaaaggtcttcctggattcccagga
cctaggggtgttcctggctcccatgggtcacctggttttccaggattaaagggagaacaa
ggacagattggagagcccgggctatttggattgcgtggcccaaagggggaccttggagaa
cgtggacatccaggaccaccaggcattttggtaaccccgcccgtccctcttaaaggtcct
acaggggacccaggatgcccaggccgccagggagaaatgggagccataggaccaccaggt
cccccaggccctcccggcctaccaggggtggcttgtccaggcatcccggggcctcccggg
ccaccagggtttcctggtccaccaggccttcccggggaagccggggttcctgggaaaccg
gattcggcccctggaaaaccagggcatcccgggccaccaggccttccgggagcaccaggg
cagccgggacctccaggattggatgtgatacagtgcagtgttagctaccctggaccacca
ggaataaagggtataatgggcccaccaggaagaagaggctccaaaggagagaaaggaaac
caaggactctgtgcctgcaaacctggccccttgggcccccctggcgccccagggcctcat
gggaggcaagggagtaaaggagacttagggctccctggctggtttggagaaaaaggtgat
ccaggcctacctggtgctgaaggccctccagggccccctggtaaacctggtgccctggga
ccccctggcttcaaaggaacaaagggtgacatggttgtagcaagagttaaagggatcaaa
ggagaaagaggacctgatgggcccctaggatttccaggccagcgaggacaacatggtcaa
gatggacgcgatggagaaacaggggagccaggacctccaggcggtcatgaagatgcaatc
ccaggtgctaaagggtttcctggaccaccaggccctccagggaaaccagggcccattggg
cctccagggctgggataccctggtccaccgggagagagagggaaatcgggactgccagga
cgccctggtgtgaggggccctgatggcgccaaggggcagaaaggtgataccattctttgt
aatgtgacctaccttgggaagcctggccctccaggttttgatggacctccaggtctgaag
ggatttcctggccccccaggtgctcctgggcagaggtgtttggatggacagaaaggccag
cggggcaagccaggagcatcaaaaataccaggcccacctggcttacgtggtaacatggga
gacccagggtttgaaggggagaaggggtcctctccctctggacccccaggtcctcccgga
cgacgtggagtagatggtcagaaaggaatcccaggagagtctgcatttggtcacccagga
ccccctggaaataggggtctcccaggagtgccaggaatgaagggagccagaggtcaccca
ggatgcccaggggttgaaggagcagctggcgttcccggctccccgggtctcaaaggcccc
aaaggcagagaggggagccctggcttcccaggtattccaggtccacctggccagtcctgt
agaaaaggcagtgcgggcatcccaggccagccagggcttcctggggctcctggtagtcca
ggtgccccaggttggaaaggccagagaggagaagcagggccttctggaccggctggaatg
aagggcttccccggaccccccggtctgcctggagctgatgggttcctaggacctccagga
atcccaggcccccttggggaagatgggttacctggtcttccaggcccaaaggggccccgg
ggcctgcctggtttccctggatttcctggagaaagaggacttccaggccaagaggggctg
cctggcagaaagggagaaattggacagaagggctggcctggttttgggggagaccaagga
gtaagaggtgccaaaggaacgagaggacctcctggagctgcaggagaaatggccatcttt
ttaaaaaaggggaaggctggggaaccggggcctcctggagagaatgggttcccaggagcg
agaggtgataaaggaagtgccgggctgcaagggagaagaggagagccgggacagcacggg
ccacctggccttcacagaggggagcctgggaggaatggagagcctggattccctggacct
cccggccctccgggcttacccgggctcagaggggtcattggtttcccaggattacccggg
gaccagggtgaaccaggtttcccaggcccccgtggattctcaggaaatgatggaggaaga
ggacccaaaggaatcaaaggtgaccctgccagtctgtatggtctaccggggccaaagggc
aagcctggcagcctgggatgtccaggacatgttggagcccctggagagcgaggactgcct
ggagaacaagggctgagaggaccccctggaagaccaggaccacctggctccatgggaccc
ccagggtgtccaggtgaacagggtctgcctgggctggagggtcaaccaggagacatggga
gaccttgggcctagaggtctcccagggaatcccggcattccaggtcctccaggagtaaaa
ggtcctgctgggtctcctggcctgaatggcttacatggtttgaagggtgaaaaaggaagc
aaaggtgcttcaggtttgtatgaaatgggtccaccaggcccagtgggactacctgggata
aaaggggagagaggagaccccgggagccccggaatttctcctccaggtcctattggagaa
aaaggcttcccgggccccccagggccgcccgggccacctggtcctgcaggtgctccagga
agagctccggagggtgacattcctgaacaaggcccatctggagatcagggacctcctggc
cctgatggtcccagaggagagcctgggcctccaggcccccctgggagtgtggatcttctg
aaaggggatcctggtgactatggcttaccaggtgccccaggatccccaggcccaccaggt
cctcctggatgtcagggtattccaggatgcgatggaaaagatggccagaaaggaccaatg
ggatttccagggcctcctggcccccctggctttcctggcccacctggagaaaaaggttta
cctggacctccaggtagaaaagggcccctgggccctccaggtaaacaattaatgtacggc
caatttctaagcaacctgaaggtagcattttgtctaaacatctag
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