Dipodomys merriami (Merriam's kangaroo rat): 138823425
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Entry
138823425 CDS
T11079
Symbol
Fdft1
Name
(RefSeq) squalene synthase isoform X1
KO
K00801
farnesyl-diphosphate farnesyltransferase [EC:
2.5.1.21
]
Organism
dmer Dipodomys merriami (Merriam's kangaroo rat)
Pathway
dmer00100
Steroid biosynthesis
dmer01100
Metabolic pathways
Module
dmer_M00101
Cholesterol biosynthesis, FPP => cholesterol
Brite
KEGG Orthology (KO) [BR:
dmer00001
]
09100 Metabolism
09103 Lipid metabolism
00100 Steroid biosynthesis
138823425 (Fdft1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
dmer01006
]
138823425 (Fdft1)
Enzymes [BR:
dmer01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.21 squalene synthase
138823425 (Fdft1)
Prenyltransferases [BR:
dmer01006
]
Terpene biosynthesis
Squalene/phytoene synthase
138823425 (Fdft1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SQS_PSY
Octopine_DH
Motif
Other DBs
NCBI-GeneID:
138823425
NCBI-ProteinID:
XP_069872909
LinkDB
All DBs
Position
Unknown
AA seq
456 aa
AA seq
DB search
MAAASCGTKAMALLKRTWVLSPGAPRRGRAWPPKDAPCPRSPRPGLGAPALPCACAQPPA
APPSAPGLLCPQDSLSSSLKTCYKYLNQTSRSFAAVIQALDGELRHAVCIFYLVLRALDT
LEDDMTISVEKKVPLLQSFHTFLYQPEWRFMESKEKDRQVLEDFPTISLEFRNLAEKYQT
VIADACRKMGFGMAEFLNKDVTSKQEWDKYCHYVAGLVGIGLSQLFSASKFEDPLVGEDS
ECANSMGLFLQKTNIIRDYLEDQQEGREFWPQEVWGRYVKKLGDFAKPENIDVAVQCLNE
LITNALHHIPDVITYLSRLRNQSVFNFCAIPQVMAVATLAACYNNQQVFKGVVKIRKGQA
VTLMMDATNMPAVKAIIYQYIEEIYQRIPSSDPCSSQTRHIISTIRTQNLPNCQLISRSH
YSPIYLSFVMLVAALSWQYLSTLSQVTDEYVQTGEH
NT seq
1371 nt
NT seq
+upstream
nt +downstream
nt
atggccgccgcctcctgcggcaccaaggccatggccctgctgaagcgcacgtgggtgctg
agccccggcgccccccggcgcggccgcgcctggccccccaaggatgcgccctgcccgcgg
agcccgcggcccggccttggggccccggccctgccctgcgcctgcgcgcagccccccgcc
gcgccgcccagcgccccgggtctgctctgcccacaggactcgctcagcagcagcctgaag
acttgctacaagtacctgaaccagaccagccgcagcttcgccgcggtcatccaggcgctg
gacggcgagctgcgccatgcggtgtgcatattttacctggtgctccgagctctggacact
ctggaggacgacatgactatcagcgtggagaagaaggttcctctgctgcagagctttcac
accttcctttaccaaccagaatggcgcttcatggagagcaaagaaaaggaccgacaagtg
ctcgaggacttccccacgatctccctggaatttaggaatctggctgagaaataccaaaca
gtgattgctgacgcttgccggaaaatgggctttggtatggcagagtttttgaataaggat
gtgacctccaaacaggagtgggataagtactgtcactatgttgccgggctggtgggaatt
ggcctttcccagctgttctctgcctccaagtttgaagaccctttagttggtgaagattcg
gagtgtgctaactcaatgggcctcttcctgcagaagacaaacatcatccgcgattacctg
gaagaccaacaggaaggaagagagttttggcctcaagaggtgtggggcaggtatgtgaag
aagctgggggattttgccaagccggagaacattgacgtggccgtgcagtgcctgaacgag
ctcatcaccaacgcgctgcaccacatcccggacgtcatcacctacctgtcacgtctccgg
aatcagagcgtgtttaacttctgtgcgattccacaggtcatggccgttgccacgttggct
gcctgttacaataatcagcaggtgttcaaaggggttgtgaagatccggaaaggacaagca
gttaccctaatgatggatgccaccaatatgccagccgtcaaagctataatataccagtac
atagaagagatatatcaaagaatcccctcctcggacccatgttctagtcaaacaagacac
atcatctccacaatccggacccagaaccttcccaactgtcagctgatctcgcgaagccac
tattcccccatttacctgtcgtttgtcatgctggtggccgccttgagctggcagtacctg
agcaccctgtcccaggtcacggacgagtatgtgcagactggcgaacactga
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