Dipodomys merriami (Merriam's kangaroo rat): 138824045
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Entry
138824045 CDS
T11079
Symbol
Smarcc1
Name
(RefSeq) SWI/SNF complex subunit SMARCC1 isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
dmer Dipodomys merriami (Merriam's kangaroo rat)
Pathway
dmer03082
ATP-dependent chromatin remodeling
dmer04714
Thermogenesis
dmer05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
dmer00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
138824045 (Smarcc1)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
138824045 (Smarcc1)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
138824045 (Smarcc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dmer03021
]
138824045 (Smarcc1)
03036 Chromosome and associated proteins [BR:
dmer03036
]
138824045 (Smarcc1)
Transcription machinery [BR:
dmer03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
138824045 (Smarcc1)
Chromosome and associated proteins [BR:
dmer03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
138824045 (Smarcc1)
PBAF complex
138824045 (Smarcc1)
GBAF(ncBAF) complex
138824045 (Smarcc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
HEAT_GCN1
Chromo
DUF919
BRCT_2
SpeFL
Motif
Other DBs
NCBI-GeneID:
138824045
NCBI-ProteinID:
XP_069873799
LinkDB
All DBs
Position
Unknown
AA seq
1105 aa
AA seq
DB search
MAATAGGGPGAAAGSAGAGGAAAAAAAGLAIYRRKDGGPASKFWESPDTVSQLDSVRVWL
GKHYKKYVHADAPTNKTLAGLVVQLLQFQEDAFGKHVTNPAFTKLPAKCFMDFKAGGTLC
HILGAAYKYKNEQGWRRFDLQNPSRMDRNVEMFMNIEKTLVQNNCLARPNIYLIPDIDLK
LANKLKDIIKRHQGTFTDEKSKASHHIYPYPSSQEDEEWLRPVMRKDKQVLVHWGFYPDS
YDTWVHSSDVDAEIEEPPIPEKPWKVHVKWILDTDIFNEWMNEEDYEVDENRKPVSFRQR
ISTKNEEPVRSPERRDRKASANARKRKHSPSPPPPTPAESRKKSGKKGQANLYGKRRSQK
EEDEQEDLTKDMEDPTPVPNIEEVVLPKNVNPKKDSENTPVKGGTVADLDEQDEEAITTG
GKEDEDPSKGDQSRSVDSGEDNVTEQTNHIIIPSYASWFDYNCIHVIERRALPEFFNGKN
KSKTPEIYLAYRNFMIDTYRLNPQEYLTSTACRRNLTGDVCAVMRVHAFLEQWGLVNYQV
DPESRPMAMGPPPTPHFNVLADTPSGLVPLHLRSPQVPAAQQMLNFPEKNKEKPIDLQNF
GLRTDIYSKKTLAKSKGASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECIL
HFLRLPIEDPYLENSDASLGPLAYQPVPFSQSGNPVMSTVAFLASVVDPRVASAAAKAAL
EEFSRVREEVPLELVEAHVKKVQEAARASGKVDPTYGLESSCIAGTGPDEPEKLEGSEEE
KMETDADGQQPEKAENKVENETDEGEKTQDGENEKSSEKEQDSEVSEDIKSEEKETEENK
ELSDTCKERENDTGKKKVEHEISEGNVATAAAAALASAATKAKHLAAVEERKIKSLVALL
VETQMKKLEIKLRHFEELETIMDREKEALEQQRQQLLTERQNFHMEQLKYAELRARQQME
QQQQHSQNPQQPHQHSGGPGLAPLGATGHPGMMPHQQPPPYPLMHHQMPPPHPPQPGQIP
GPGSMMPGQPMPGRMLPTVAANIHPAGTGPAPPGMPPIPGNILGPRVPLTAPNGMYPPPP
QQQPPPPADGVPPPPAPGPPASVTP
NT seq
3318 nt
NT seq
+upstream
nt +downstream
nt
atggccgcgacggcgggaggcgggccgggagcggccgcgggctcggcgggcgcagggggc
gcggcggcggcggcggcggcggggctggccatttaccggcggaaggacgggggtccggcc
agcaagttttgggagagcccggacacggtgtcccagctggactcggtgcgggtctggctg
ggcaagcactacaagaagtatgttcatgcagatgctcctaccaataaaacactggctgga
ttggtagtacagcttctccagttccaggaagatgcctttggaaagcatgtcaccaacccg
gccttcactaaactccctgcaaaatgtttcatggattttaaagctggaggtaccttgtgt
cacattcttggggctgcttacaaatacaaaaatgaacagggatggaggagatttgatcta
cagaatccatctcgaatggatcgcaatgttgaaatgtttatgaatattgaaaaaacattg
gtgcagaacaattgtctggctagacccaacatctacctcattccagacattgatctgaag
ttggctaacaaattgaaagatatcatcaaacgacaccagggaacatttactgatgagaag
tcaaaagcttcccaccacatttatccatatccttcctcacaagaggatgaagaatggttg
agaccagtgatgagaaaagataagcaggtattagtgcactggggtttttacccagacagc
tatgatacttgggtccatagtagtgatgttgatgctgaaattgaagagccaccaattcca
gaaaaaccctggaaggtacatgtaaaatggattttggatactgatattttcaatgaatgg
atgaatgaggaggattatgaagtagatgaaaacaggaaaccagtgagctttcgtcagcga
atttcaacaaaaaatgaagagccagtcagaagtccagaaaggagagatagaaaagcatca
gctaatgcaagaaagaggaaacattccccttcaccaccacctcccacacctgcagaatca
cgaaagaagagtggaaagaaagggcaagctaatctttacgggaagcgcagaagtcaaaag
gaggaagatgagcaggaagatcttaccaaggatatggaggatccaactcccgtacctaat
atagaggaagtggtactccccaaaaatgtaaacccaaagaaagatagtgaaaatacacct
gttaaaggaggaactgtagcagatctagatgagcaggatgaagaagcaattacgacagga
ggaaaggaagatgaagatcctagcaaaggtgatcagagccggtcagttgactctggtgaa
gataatgtaacagaacagaccaatcacattatcattcccagctatgcatcctggtttgat
tataactgtattcatgtgattgaacggcgtgcacttcctgagtttttcaatggaaaaaac
aaatcaaagactccagaaatatacttagcatatcgaaactttatgattgacacataccgt
ctaaacccccaggagtatttaaccagcactgcttgtcgaaggaacttaactggagatgta
tgtgctgtgatgagggtgcatgcgtttttagagcaatggggacttgttaattatcaagtt
gatccagaaagtcgacctatggcaatgggaccccctcctactcctcatttcaatgtattg
gccgataccccctctgggcttgtgcctctgcatcttcgatcaccacaggttcctgctgct
cagcagatgttaaattttcctgagaagaacaaagaaaaaccaattgatttgcagaacttt
ggtcttcgtactgacatttactccaagaaaacattagctaaaagcaaaggcgctagtgct
ggaagggagtggacggaacaggagacccttctgctcttagaggctctggaaatgtacaag
gatgattggaataaagtatccgaacatgtgggaagtcggactcaggatgaatgcatcctt
cactttttgaggcttcccattgaagacccatacctggagaattcagatgcttcccttggc
ccgctggcctatcaacctgtccccttcagccagtctggaaaccctgtcatgagtactgtt
gcttttctggcatctgtggtggaccctcgtgtggcttctgctgcagcaaaagcagcacta
gaggagttttctcgggtgcgagaagaggtaccactggaattggttgaagctcatgtcaag
aaagtacaggaagctgctcgtgcctctgggaaggtggatcccacctatggcttggagagc
agctgtattgcaggcacagggcccgatgagccagagaaactcgaaggatctgaagaggaa
aaaatggaaacagatgctgatggtcaacagcctgagaaggcagaaaataaagtggaaaat
gaaacagatgaaggtgaaaaaacccaggatggagaaaatgaaaaaagtagtgagaaggaa
caggatagcgaagttagtgaggacattaaatcagaagaaaaggagactgaagagaacaag
gaactctctgatacatgtaaagaaagagaaaatgataccggaaagaagaaagtagaacat
gaaatttctgaaggaaatgttgccacagccgcagcagctgctcttgcttcagctgccacc
aaagccaagcacctggctgctgtggaggagagaaagatcaagtccctagtagctctcctg
gttgagacacaaatgaaaaaactagaaatcaaacttcgacattttgaagagctggaaact
atcatggacagagagaaagaagctctggaacaacagaggcagcaattgcttactgagcgc
cagaacttccacatggaacagctgaaatacgcagagttaagagcccgacagcaaatggag
cagcagcagcagcatagccaaaaccctcagcagccacaccagcactcaggaggacctggc
ctcgcccctcttggagcaacaggacacccaggcatgatgccacatcagcagccccctccc
taccctctgatgcaccaccagatgccaccacctcatccccctcagccaggtcagatacca
ggcccaggttctatgatgcctgggcagcccatgccaggccgcatgcttcccactgttgca
gccaacatccaccctgctgggactggccctgcccctcctggtatgcctccaatacctgga
aacatcttaggaccccgggtacccctcacagcaccgaatggcatgtatccccctccacca
caacaacaaccaccgccacctgcagatggggtccctccacctcctgctcccggtccacca
gcctcggtcactccttag
DBGET
integrated database retrieval system
