Dipodomys merriami (Merriam's kangaroo rat): 138824756
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Entry
138824756 CDS
T11079
Symbol
Pdzrn3
Name
(RefSeq) E3 ubiquitin-protein ligase PDZRN3
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
dmer Dipodomys merriami (Merriam's kangaroo rat)
Brite
KEGG Orthology (KO) [BR:
dmer00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
dmer04121
]
138824756 (Pdzrn3)
Enzymes [BR:
dmer01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
138824756 (Pdzrn3)
Ubiquitin system [BR:
dmer04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
138824756 (Pdzrn3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
zf-C3HC4_2
zf-RING_2
zf-C3HC4
zf-RING_UBOX
Sina_ZnF
zf-C3HC4_3
zf-TRAF
zf-C3HC4_4
zf-RING_5
TRAF3_RING
Prok-RING_4
PDZ_Tricorn
zf-RING_10
zf-rbx1
CEP104_ZnF
Motif
Other DBs
NCBI-GeneID:
138824756
NCBI-ProteinID:
XP_069875074
LinkDB
All DBs
Position
Unknown
AA seq
1068 aa
AA seq
DB search
MGFELDRFDGDVDPDLKCALCHKVLEDPLTTPCGHVFCAGCVLPWVVQEGSCPARCRGRL
SAKELNHVLPLKRLILKLDIKCAHAARGCGRVVKLQELPEHLERCDFAPARCRHAGCGQV
LLRRDVEAHMRDACDARPVGRCQEGCGLPLTHGEQRAGGHCCARALRAHNGALQARLGAL
HKALKKEALKAGKREKALVAQLAAAQLELQMTALRYQKKFTEYSARLDSLSRCVAAPSGG
KGEETKSLTLILHRDSGSLGFNIIGGRPCVDNQDGSSSEGIFVSKIVDSGPAAKEGGLQI
HDRIIEVNGKDLSRATHDQAVEAFKTAKEPIVVQVLRRTPRTKMFTPPAESQLVDTGTQT
DITFEHIMALTKMSSPSPPVLDPYLLPEEHSSAHEYYDPNDYMGDMHQEMDREELELEEV
DLYRMNSQDKLGLTVCYRTDDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQN
REEAVALLTSEENKNFSLLIARPELQLDEGWMDDDRNDFLDELHMDMLEEQHHQAMQFTS
SVFQQKKHEEDGGTTDTATIMSNQHEKDSGVGRTDESTRNDESSEQENNGDDATASSSNP
LAGQRKLTCSQDTLGSGDLPFSNESFISADCTDVDYLGIPVDECERFRELLELKCQVKSA
SPYGLYYPGSPLEAGKSDPDSVDKELELLNEELRSIELECLSIVRAHKMQQLKEPCAREP
WMLHHSAFRNYNTSIDLRRHELSDITELPEKSDKDSSSAYNTGESCRSTPLTLETSPDNS
LRRAAQGAPTEAYGPPPKNLLAITEDPETVAPSYNNPAAKELDPGLSPESKDHRTGGGDG
RSPSASPPKLGGGAYLSPYPHSPYKHAHIPAHAQHYQSYMQLIQQKSAVEYAQSQMSLVS
MCKDLNSSHSSTEPRMEWKVKVRSDGTRYITKRPVRDRLLRERALRIREERSGMTTDDDA
VSEMKMGRYWSKEERKQHLVKAKEQRRRREFMMQSRLDCLKEQQQQQQQGPDDRKEVSIL
ELSHKKMMKKRNKKIFDNWMTIQELLTHGTKSPDGTRVYNSFLSVTTV
NT seq
3207 nt
NT seq
+upstream
nt +downstream
nt
atgggcttcgagctggaccgcttcgatggcgacgtggacccggacctgaagtgcgcgctg
tgccacaaggtcctggaggacccgctgaccaccccgtgcggccacgtcttctgtgccggc
tgcgtgctgccctgggtggtgcaagagggcagctgcccggcgcgctgccgcggtcgcctg
tcggccaaggagctcaaccacgtcctgcccctcaagcgcctgatcctcaagctggatatc
aagtgcgcgcacgcggcgcgcggctgcggccgggtggtcaagctgcaggagctgcccgag
cacctggagcgctgcgacttcgcgcccgcgcgctgccgccacgcgggctgcggccaggtg
ctgctgcggcgcgacgtggaggcgcacatgcgcgacgcgtgcgacgcgcggcccgtgggc
cgctgccaggagggctgcgggctgccgctgacgcacggcgagcagcgcgcgggcggccac
tgctgcgcgcgggcgctgcgggcgcacaacggcgcgctgcaggcccgcctgggcgcgctg
cacaaggcgctcaagaaggaggcgctgaaggccggcaagcgcgagaaggcgctggtggcg
cagctggccgccgcgcagctcgaactgcagatgaccgcgctgcgctaccagaagaagttc
actgagtacagcgcgcgcctcgactcgctcagccgctgcgtggccgcgccgtcggggggc
aagggtgaagaaaccaaaagtctaacgctcatcctacatcgggattctggctccctggga
ttcaatattattggtggccggccttgtgtggacaatcaagatggatcatccagtgaagga
atcttcgtatccaaaatagttgacagtgggccggcagccaaggaaggaggcctgcaaatt
catgacaggattattgaggtaaacggcaaagatttatccagagcaactcatgaccaggct
gtggaagctttcaagacagccaaagagcccattgtggtccaggtactgaggaggacacct
cggaccaaaatgttcacgccacctgcagagtcgcagctggtggatacaggcactcaaact
gacatcacctttgaacacatcatggcactgaccaagatgtcttcacccagcccacctgtg
ctggacccctacttgctgccagaggagcactcctcagcccatgaatactatgatccaaat
gattacatgggagacatgcatcaggagatggacagagaggagctggagctggaggaagta
gacctctacagaatgaacagccaggacaagctgggtctcaccgtatgctaccggacagat
gatgaagatgacattggcatttatataagtgagattgaccctaacagcatcgcagccaag
gatgggcgcattcgagaaggagaccgcattatccagattaatggaatagaggtacagaac
cgtgaagaagctgtggctcttctgaccagtgaagaaaataagaacttttcattgctgatt
gcaaggcctgaactccagctggacgagggatggatggatgacgacaggaatgactttctg
gatgagctgcacatggacatgcttgaggaacagcaccaccaggcaatgcagttcacatcc
agcgtgttccagcagaagaagcacgaggaagacggagggaccaccgacaccgccaccatc
atgtccaaccagcacgagaaggacagcggcgtggggcggacggatgagagcacgcgcaac
gacgagagctccgagcaggagaacaacggcgacgacgccacggcctcctcctccaacccg
ctggcgggccagaggaagctcacctgtagccaggacaccctgggcagcggcgacctgcct
ttcagcaacgagtccttcatctcggccgactgcaccgacgtggattacctgggcatcccg
gtggacgagtgcgagcgcttccgcgagctgctggagctcaagtgccaggtgaagagcgcc
agcccctacggcctgtactaccccggcagccccctggaggcgggcaagagcgaccccgac
agcgtggacaaggagctggagctcctcaacgaggagctgcgcagcatcgagctggagtgc
ctgagcatcgtgcgcgcgcacaagatgcagcagctgaaggagccgtgcgcgcgcgagccc
tggatgctgcaccacagcgccttccgcaactacaacaccagcatcgacctgcgccgccac
gagctctccgacatcaccgagctgcccgagaagtcggacaaggatagttcgagcgcctac
aacaccggggagagttgccgcagcacgccgctcaccctggagacctccccggacaactct
ctccggagagcggcccagggcgcccccacggaggcctacgggccgccccccaaaaatctg
ctcgccatcaccgaagaccccgagaccgtcgccccgagttacaacaacccggccgccaaa
gagctggaccccggcctgtctccggagagcaaggatcaccgcaccgggggcggggacggc
cggagccccagcgccagccccccgaagctgggcggcggcgcctacctgtccccgtacccc
cactccccgtacaaacacgcgcacatccccgcgcacgcgcagcactaccagagctacatg
cagctcatccagcagaagtcggccgtggagtacgcgcagagccagatgagcctggtgagc
atgtgcaaggacctgaactcctcccactcgtccaccgagccccggatggagtggaaggtg
aaggtccgcagcgacggcacgcgctacatcaccaagaggcccgtgcgcgaccggctgctg
cgcgagcgcgcgctgcgcatccgcgaggagcgcagcggcatgaccaccgacgacgacgcg
gtgagcgagatgaagatggggcgctactggagcaaggaggagcgcaagcagcacctggtg
aaggccaaggagcagcggcggaggcgcgagttcatgatgcagagccggctggattgtctg
aaggagcagcagcagcagcagcagcaagggccggatgaccggaaggaggtcagtatcctc
gaactgagccacaagaaaatgatgaagaagaggaataagaagatcttcgacaactggatg
accatccaggaactcctcacgcacggcaccaagtccccggacggcacccgggtgtacaat
tctttcctgtccgtgacgactgtatga
DBGET
integrated database retrieval system
