Dipodomys merriami (Merriam's kangaroo rat): 138825493
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Entry
138825493 CDS
T11079
Name
(RefSeq) structure-specific endonuclease subunit SLX4-like isoform X1
KO
K10484
structure-specific endonuclease subunit SLX4 (BTB/POZ domain-containing protein 12)
Organism
dmer Dipodomys merriami (Merriam's kangaroo rat)
Pathway
dmer03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
dmer00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
138825493
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
dmer04121
]
138825493
03400 DNA repair and recombination proteins [BR:
dmer03400
]
138825493
Ubiquitin system [BR:
dmer04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul3 complex
Adoptor and target recognizing subunit (BTB)
138825493
DNA repair and recombination proteins [BR:
dmer03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
138825493
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Slx4
BTB
zf-C2H2_4
Motif
Other DBs
NCBI-GeneID:
138825493
NCBI-ProteinID:
XP_069876231
LinkDB
All DBs
Position
Unknown
AA seq
1720 aa
AA seq
DB search
MMDESDDDFKELCASFFQRVKKNGTKEVFAEKKPQKTSNSTQIRNKLKKTKQPATKKTFQ
GIVEKKPPPHSQATRTEQQGAIKSQESEPTPAVNGEDDVLAPAPDFPVLSEKAQNIWTES
APDGDSQPAASCLTAARPGPSRCRAAELAVQRMQQFKRVDPERLSHASEENILGAALEEE
GPESPYKEVVAGNGFEPRLPATDSDAAVALALQQELGREGTTVFDDGLEEKGLFFCQMCH
KNLSTMTVTRREQHVNRCLDEAEGIQKSSAPQIPECPICGKPFLSPKSRASHLKQCAVRM
EVGPQLLLQAVRLQAAEPRAGSNPPAPSFDYTGGLKRKRATNKEPQKRQKVKPEPLSEDM
LMAMALSRSEMEQSPAVPALTLESAFSEQIRLGAEKKSRKKRVLLSPPQLLVQDSETTGR
QIEDRVAQLLAEELELTSTPLLPASRILKEEWEKAGWCLQLPEGKQNFLWEGSALTRGWA
AESFYTDGLMPLIVPQQPAGEPELELVLSEQPPALQSSPAVSPGCQPPSASQREHQALQD
LMDLAKEGLSASPLPISSEGLDVMPSQLPLTGFVLSPEEKPLERSSLASHSLRLLVSDFG
TMVNNPHLSDVQFQTDSGDTLYAHKFVLYARCPLLIQYVNREGFSAVEDGDQTQRVLLSS
VRAEAVCAFLQYLYAADLDLPSHLAPDLHTLALRFGVSDLAYLCEQVPVVTDMECEQQEK
EDENCESRAENFQELLRSVWGDEEEEAETLLKFEGHKEDREEVNEAEMEEIYEFAATQRK
LLQEEKARDKDRDEGQLGEDGHGTKPAQRGGQGDEKLEKPEQAESVWPEKAETPASWENS
KHPLLLQDQCSDQVEKAETQEQEATMEMSGRASSCSPSAGCRAGSKDGSPVHPITVHDYE
RLLASTQDEFFELSPTPSSHNEHNDTVEESGTDTVCPPTPQQPLCSGLKQSPGSGRPSES
QPHLRHTGNTPLPAPHSHSGVSKMASPRSASPVKPSKRKRDNSYLTVLKEPGHQRGKRPS
STLKGKNKSIHISPENPQPIDLTQSKCDHLSSRPQSPPSHVNKEDEVILLLDSDEELELE
HTKTKSVSNDPPGGNVLEVSLKSSELFPAIDVDADQEDSPSPLGRGVGLQPEEGDSQPDR
QVTVGGRGSPELFCDQDSSPEEDATTDTSWLVPATPLAGRSRDCSSQTQITSLRMRPSAD
RKARRLSKTSTKHRPGPETAQFSVTRPHVSPVSCPYSRRHRLSLLAPSPATRSCPDFTRQ
YQKHSPPGLGLPNEIAVSEVVEVGDSEDEEEVVVASHPADSSPLQDSDPPVPAGNYSWHV
EPLSPIPIDHLNLERTGPLSTSSPRSQTQEALDSGGRLSPGFPDTSLSRGSVAAQGALPA
RPPRASTPGSSRLSFLNPALWDDWDEEENSPEAPFAAQTPNAQTQKPARPETPSADQKNL
PPKVPITPMPQYSIMETPVLKKELDRFGVRPLPKRQMVLKLKEIFQYTHQTLESDSEDEI
QPSQVPPEVPSSQTLTTDTDKPSSARGHTQLTASLSPGTQRSKGPTKTRGPQPCVLQPGE
SIPLLSRSPARGPPPASPGPAGDTQFLGSQESVATSVDSSDSSFSSQSSSCEFGATLESA
GEGEELSASQAAIQTADMEAALRRYVRSRPDLYQKVLKYQPLELAELQAELKRDGIHIAT
TKLLDILDTQCITFTTAAARKEKLKKRGQQRMGRKRKERN
NT seq
5163 nt
NT seq
+upstream
nt +downstream
nt
atgatggatgagtctgatgatgattttaaagaactctgtgccagctttttccaaagggta
aaaaaaaatggaactaaagaagtatttgcagaaaagaaaccacaaaagacctcaaacagc
actcagataagaaacaaattgaaaaagaccaaacaacctgctacgaagaagacctttcaa
ggcattgtggagaagaaacctcctccacacagccaggccactaggactgaacagcaagga
gcaatcaagtcacaagaaagcgaacccactcccgccgtgaacggagaagatgatgtgctt
gctcctgctccagactttcctgtgctctcggaaaaggcacagaacatctggacagagagt
gctcctgatggtgactcccagcctgccgcatcctgtttgacagcagccaggccaggtcca
tccagatgccgcgccgcggagctggctgtccagcggatgcaacagtttaagagagtagac
cctgagcgtttgagtcatgcttccgaagagaacatccttggggctgccctagaagaagaa
ggcccagagagcccttacaaggaggtggtggcaggaaacgggtttgagcccagactccct
gccacagacagcgacgctgcggtggccttggccctgcagcaggagcttggaagggaaggc
accaccgtgtttgacgacggcctggaggagaaggggttgttcttctgccaaatgtgccac
aagaacctctcgacgatgaccgtgacccgcagggagcagcatgtgaacaggtgcttggat
gaggctgaagggatacagaagtcttctgcaccccagatcccagaatgccccatttgtggc
aaaccattcctcagccccaagagcagagccagtcacctgaagcagtgcgcagtgaggatg
gaggtggggccgcagctcctgctgcaggctgtgcggctgcaggcagccgagcccagggcg
ggcagcaacccccctgctcccagcttcgactacaccggaggtctgaaacggaaaagagcc
acaaacaaggagccacagaagaggcagaaggtgaagccagagcctctatctgaagacatg
ctgatggccatggctctatcccggtctgagatggagcagagtcccgccgtgcctgcactc
accctggaaagtgctttttcagagcagataaggctaggagcagagaagaagagtcgtaag
aagagagtcctgctgtccccaccacagttgttagtccaggactctgagaccacagggaga
cagatcgaggatcgcgtggcccagctcctggcagaagagttggaactgaccagcacacca
ctgcttcctgccagcaggatcctcaaggaagagtgggagaaggcaggctggtgcctgcag
cttcctgaaggaaagcagaactttctgtgggagggcagcgccctgacccgaggctgggct
gcagagtccttctacacggacggcctgatgcccctcattgtgcctcagcagcctgccggg
gagcctgaacttgagctggtgctatctgaacagccacctgccctccaaagcagtcctgct
gtcagtcctggctgtcaaccaccgtcggccagccagagggagcaccaggcgctccaggac
ctcatggacttggccaaggaggggctgagcgccagcccattacccatcagctcagaaggt
ttggatgtgatgcccagccaacttcccctgactgggtttgtcctgtctcccgaggagaag
cccctggagaggagcagcctcgcctcgcactccctccgcttgctggtctctgactttggc
accatggtcaataacccacacctgagcgatgtccagttccagacagacagcggggacacg
ctttatgcccacaagtttgttctttacgcccgatgtccgctgctcattcagtatgtaaac
cgtgaaggcttctctgctgtggaggacggggatcaaacccagcgtgtcctgctgagcagc
gtgagggccgaagcagtctgcgcattcctgcagtatctctatgccgcagacctagacctg
ccttcccacctggctcccgacctgcacactctggccctcaggtttggtgtgagtgacctt
gcttatctgtgtgaacaagtgccagttgtgacagacatggagtgtgaacaacaggagaag
gaagatgagaattgtgaaagcagagcagagaatttccaagaactcttgaggtcagtgtgg
ggagatgaagaggaggaagcagagactttgttgaaatttgagggccacaaagaagacaga
gaagaagtgaatgaagcagaaatggaagaaatttatgaatttgcagcgactcaacggaag
ttgctccaagaggaaaaagcaagagacaaagacagggacgagggtcagctcggggaggac
ggtcacggcacaaagcctgcccagcgaggaggccagggagacgaaaagctggaaaagcca
gaacaagcggagtcagtttggccagaaaaagctgagactccagccagctgggaaaattca
aaacacccccttctgctccaggaccagtgctcagaccaagtagagaaggcagagacccag
gagcaggaggcaacgatggagatgtctggacgcgccagctcctgcagcccttctgcgggc
tgccgggcagggagtaaagatggctcccccgtgcacccaatcacggtccatgattatgag
cgactccttgcgtcaactcaagatgaattctttgaactgtccccaacaccaagcagtcac
aatgagcacaacgacacggtcgaggagtcagggacagacacagtctgtcccccgacccct
cagcaacccctgtgcagcggcctcaaacagtcccctgggagtggacgtcccagcgagtcc
cagcctcaccttcgccacaccggcaacacgcccctgccagcgccccactcgcacagtggc
gtttccaagatggcttccccaagatcagcctctccagttaaaccgtcaaagcgcaagagg
gacaatagctaccttacagtacttaaggagccaggccaccagagaggcaaaagaccgagt
tccacactgaaaggcaaaaacaagagcattcacatttccccagaaaatcctcagcccatt
gacctgacccagtcaaagtgtgaccacttgagctccaggccccagagtcccccatcccat
gtgaacaaagaggatgaagtcatcctgttgctggattcagatgaagagctggagcttgaa
cacacgaaaaccaagtcagtttctaacgaccccccaggagggaatgtcctagaagtcagc
ctcaagtcctccgagctgtttccagccattgatgtggacgcagatcaggaagactctccg
agcccactggggagaggagtcgggctgcagccagaggaaggggacagtcagccagaccgg
caggtcacggtgggtggcagaggttcacctgagctgttctgtgaccaggacagcagccct
gaggaggacgccaccacagacacgtcgtggctggtgcctgccacccccctggccggcaga
agccgtgactgctcatcacagacccaaatcacaagcctcaggatgaggccctcagcagac
aggaaggctcggcgcctgtccaagacctccacaaaacacaggcctgggccagaaacagca
cagttttcggtcaccaggccccatgtgtcacccgtcagctgcccctactctaggcgccac
aggctctctttgctggcaccaagtcctgccacaagaagctgccccgatttcactcggcag
taccagaaacattctccaccggggctgggcctgccaaatgagattgccgtgagtgaagtg
gtagaagttggagacagtgaagatgaggaagaggtggtggtggcctcccatccggctgac
agcagcccccttcaggacagtgaccccccagttcccgcaggtaactactcttggcacgtt
gagcctctttcaccaattccaattgaccacctgaacctggagcggacgggccctctgagc
accagcagtccccgaagtcagacccaggaggccctggacagtggtggccgcctctcccca
ggattcccagataccagcctgagccggggaagcgtggccgcccagggagcactgccagcg
cggcccccacgggccagcacaccaggaagcagcaggctgagcttcctgaacccagctctg
tgggacgactgggatgaggaagagaactctccagaggctccttttgcagcacagacacca
aatgcccaaactcagaaaccagcaaggccagagacaccaagtgctgatcagaagaacctg
ccccccaaagtgcccataactcccatgccacagtactccatcatggagaccccggtgctg
aagaaggaactggacagatttggagtccgcccattgcccaaacgccagatggttctaaaa
ctaaaggagattttccaatatacgcaccagaccctggagtcagactctgaggatgagatc
cagccctcccaggtgccccccgaggtgccttccagccagaccctcaccactgacaccgac
aagccttcgagcgccagaggccacacccagctcacggcatccctgagtcctgggacccaa
aggtccaaggggcctacgaagaccaggggcccccaaccttgtgtgctgcagcccggtgaa
agcatcccactcctgagcaggtcaccagcccgtgggccacctccagcctctccaggtcct
gccggtgacacccagttcctaggctcccaggagtcagtggccacctccgtggacagcagt
gacagctcctttagctcacaaagttcttcctgcgaattcggagcaacccttgagtctgca
ggggaaggggaggagctgagcgcgtcgcaggcagccatccagacagcagacatggaggcg
gcactgcgccgctacgtccgctctaggccggacctgtaccagaaggtgctgaagtaccag
cccctggagctggcagagcttcaggcggagctgaagcgggatggcatccacatagccaca
accaagctgctggacatcctggacacccagtgcatcaccttcaccaccgctgcagcccgg
aaggagaagctcaagaagagagggcagcagcgcatgggcaggaagagaaaggagcggaac
taa
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