KEGG   Dipodomys merriami (Merriam's kangaroo rat): 138825916
Entry
138825916         CDS       T11079                                 
Symbol
Vcl
Name
(RefSeq) vinculin isoform X1
  KO
K05700  vinculin
Organism
dmer  Dipodomys merriami (Merriam's kangaroo rat)
Pathway
dmer04510  Focal adhesion
dmer04517  IgSF CAM signaling
dmer04518  Integrin signaling
dmer04519  Cadherin signaling
dmer04520  Adherens junction
dmer04670  Leukocyte transendothelial migration
dmer04810  Regulation of actin cytoskeleton
dmer04820  Cytoskeleton in muscle cells
dmer05100  Bacterial invasion of epithelial cells
dmer05146  Amoebiasis
Brite
KEGG Orthology (KO) [BR:dmer00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04517 IgSF CAM signaling
    138825916 (Vcl)
   04518 Integrin signaling
    138825916 (Vcl)
   04519 Cadherin signaling
    138825916 (Vcl)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    138825916 (Vcl)
   04520 Adherens junction
    138825916 (Vcl)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    138825916 (Vcl)
   04810 Regulation of actin cytoskeleton
    138825916 (Vcl)
 09150 Organismal Systems
  09151 Immune system
   04670 Leukocyte transendothelial migration
    138825916 (Vcl)
 09160 Human Diseases
  09171 Infectious disease: bacterial
   05100 Bacterial invasion of epithelial cells
    138825916 (Vcl)
  09174 Infectious disease: parasitic
   05146 Amoebiasis
    138825916 (Vcl)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04812 Cytoskeleton proteins [BR:dmer04812]
    138825916 (Vcl)
   04147 Exosome [BR:dmer04147]
    138825916 (Vcl)
Cytoskeleton proteins [BR:dmer04812]
 Eukaryotic cytoskeleton proteins
  Actin filaments / Microfilaments
   Actin-binding proteins
    Cross-linking proteins
     138825916 (Vcl)
Exosome [BR:dmer04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   138825916 (Vcl)
SSDB
Motif
Pfam: Vinculin Talin_IBS2B VMAP-M0
Other DBs
NCBI-GeneID: 138825916
NCBI-ProteinID: XP_069876728
LinkDB
Position
Unknown
AA seq 1134 aa
MPVFHTRTIESILEPVAQQISHLVIMHEEGEVDGKAIPDLTAPVAAVQAAVSNLVRVGKE
TVQTTEDQILKRDMPPAFIKVENACTKLVQAAQMLQSDPYSVPARDYLIDGSRGILSGTS
DLLLTFDEAEVRKIIRVCKGILEYLTVAEVVETMEDLVTYTKNLGPGMTKMAKMIDERQQ
ELTHQEHRVMLVNSMNTVKELLPVLISAMKIFVTTKNSKNQGIEEALKNRNFTVEKMSAE
INEIIRVLQLTSWDEDAWASKDTEAMKRALASIDSKLNQAKGWLRDPNANPGDAGEQAIR
QILDEAGKVGELCAGKERREILGTCKMLGQMTDQVADLRARGQGASPVAMQKAQQVSQGL
DVLTAKVENAARKLEAMTNSKQSIAKKIDAAQNWLADPNGGPEGEEQIRGALAEARKIAE
LCDDPKERDDILRSLGEIAALTSKLADLRRQGKGDSPEARALAKQVATALQNLQSKTNRA
VANSRPAKAAVHLEGKIEQAQRWIDNPTVDDRGVGQAAIRGLVAEGHRLANVMMGPYRQD
LLAKCDRVDQLTAQLADLAARGEGESPQARALASQLQDSLKDLKAQMQEAMTQEVSDVFS
DTTTPIKLLAVAATAPPDTPNREEVFDERAANFENHSGRLGATAEKAAAVGTANKSTVEG
IQASVKTARELTPQVVSAARILLRNPGNQAAYEHFETMKNQWIDNVEKMTGLVDEAIDTK
SLLDASEEAIKKDLDKCKVAMANIQPQMLVAGATSIARRANRILLVAKREVENSEDPKFR
EAVKAASDELSKTISPMVLDAKAVAGNISDPGLQKSFLDSGYRILGAVAKVREAFQPQEP
DFPPPPPDLEQLRLTDELAPPKPPLPEGEVPPPRPPPPEEKDEEFPEQKAGEVINQPMMM
AARQLHDEARKWSSKPGVPATKVGIGVVAEADVADAVGFPVPSDMEDDYEPELLLMPSNQ
PVNQPILAAAQSLHREATKWSSKGNDIIAAAKRMALLMAEMSRLVRGGSGTKRALIQCAK
DIAKASDEVTRLAKEVAKQCTDKRIRTNLLQVCERIPTISTQLKILSTVKATMLGRTNIS
DEESEQATEMLVHNAQNLMQSVKETVREAEAASIKIRTDAGFTLRWVRKTPWYQ
NT seq 3405 nt   +upstreamnt  +downstreamnt
atgccggtgtttcatacacgcacgattgagagcatcttggagccggtggcgcagcagatc
tcgcacctggtgattatgcacgaggagggcgaggtggacggcaaagccattcctgacctc
acggcgcccgtggctgcggtgcaagcggcggtcagcaacctagtccgggttggaaaagag
actgttcagaccaccgaggatcagattttgaagagagatatgccaccggcatttattaag
gtcgagaatgcttgcaccaagcttgttcaggcagcgcagatgcttcagtcagacccttac
tcagtgcctgctcgagattatctcatcgatgggtcaaggggcatcctctctggcacatca
gacctgcttcttacctttgatgaagctgaggttcggaaaatcattcgtgtttgcaaaggc
atcttggaatatcttacagtggcagaggtagtggagactatggaagatttggtcacttat
acaaagaatcttgggccaggaatgactaagatggccaagatgattgatgagagacagcag
gagctgactcaccaggagcatcgagtgatgttggtgaactcgatgaatactgtgaaagag
ttgcttccagttctcatttcagctatgaagatttttgtaacaactaaaaactcaaaaaac
caaggaatagaagaagctttgaaaaatcgcaattttactgtagaaaagatgagtgctgaa
attaatgagatcattcgtgtcttacaactcacttcttgggatgaagatgcctgggccagc
aaggacactgaagccatgaagagagcactagcctccatagactccaaactgaaccaggcc
aaaggttggcttcgggatcccaatgccaacccaggggatgctggtgagcaagccatcagg
cagatcttagatgaagctggcaaagttggtgaactttgtgcaggcaaggaacgcagggag
atcctgggaacctgcaagatgctggggcagatgactgatcaagtggctgacctccgagcc
agaggacaaggcgcctcacctgtggccatgcagaaagcccagcaggtatctcaaggactg
gatgtgctcacagcgaaggtggaaaatgcagctcgcaagctggaagccatgacaaactca
aagcagagtattgcaaagaagatcgatgctgctcagaattggcttgcagatccaaatggt
ggacctgaaggggaagaacagattcgaggggctttggctgaagctcggaaaatagcagaa
ttgtgtgatgatccaaaagagagagatgacattctgcgttcccttggagaaatagctgct
ctgacttcgaaattagcagatttaagaagacagggtaaaggagattccccagaggctcga
gcactggccaaacaggtagccactgccttgcagaacctgcagtccaaaaccaacagggct
gtggccaacagcagacctgccaaggcagctgtccacctggagggcaagattgagcaagct
cagcggtggattgacaaccccacagtggacgaccggggagtaggccaggctgccatccgg
gggcttgtagctgaaggacatcgtttggctaatgttatgatgggaccttatcggcaagat
cttctggctaagtgtgaccgtgtggatcagctgacagctcagttggctgacctggctgcc
cgaggggaaggggagagtcctcaggccagagcacttgcatcacagcttcaagactcctta
aaggatctgaaagcccagatgcaggaagccatgactcaggaggtgtcagatgttttcagt
gataccacgactcccatcaagctattggcagtggcggccactgcccctcctgatactccc
aatagggaggaggtgtttgatgagagagcagcaaactttgagaaccattcaggaaggctt
ggagccacagcagagaaggctgctgctgttggtactgctaacaaatcaacagtggaaggc
attcaggcgtcagtgaagacggcccgagaactcacaccccaggttgtatctgctgctcgc
atcttacttaggaaccctggaaatcaagctgcttatgaacattttgagactatgaagaac
cagtggattgataatgttgaaaaaatgacagggctggtggacgaagcaattgataccaaa
tctctcttggatgcttctgaagaagcaatcaaaaaggacctggacaagtgtaaggtagct
atggccaacattcagccgcagatgctggtcgctggagcaaccagtatcgctcgtcgggcc
aaccgaatcctgctggttgctaagagggaggtagagaactcggaagatcccaagttccgt
gaggctgtcaaagccgcctctgatgaactgagcaaaaccatctccccgatggtgctggat
gcaaaggctgtggctggaaacatctctgaccctggcctgcaaaagagcttcctggactca
ggatatcggatcctaggagctgtggccaaggtcagagaagctttccaacctcaggagcct
gacttcccgccgcctccaccagaccttgaacagctccgtctaacagatgagcttgctcct
cccaaaccaccactgcctgagggtgaggtccctccacccaggcccccacctccagaggaa
aaggatgaagagttccctgagcagaaagccggggaggtgattaaccagccaatgatgatg
gctgccaggcagctccatgatgaagctcgcaaatggtccagcaagccgggtgtcccagcc
actaaggtgggtataggagttgtagctgaggcagatgtggctgatgctgttgggttccct
gtcccctctgacatggaagatgattacgaacctgagctgctgttaatgccatctaatcag
ccagtcaaccagcccattctggccgcggctcagtccttgcatcgggaagctaccaagtgg
tctagtaagggcaatgacatcattgcagcagccaagcgcatggctctactgatggctgag
atgtctcggcttgtgagagggggcagtggtaccaagcgggcacttattcagtgtgccaag
gacatcgccaaggcctcagatgaggtcactcggttggccaaggaggttgccaagcagtgc
acagataagcggattagaaccaatctcttgcaggtatgtgagcgaatcccaactataagt
acccagctgaaaatcctgtccacagtgaaggccaccatgctgggccggaccaacatcagt
gatgaggaatctgaacaggccacagagatgctggttcacaatgcccagaaccttatgcag
tctgtgaaagagactgtgcgagaggcagaggctgcttcaatcaaaatccgaacagatgct
ggatttacactgcgctgggtcagaaagactccttggtaccagtag

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