Dipodomys merriami (Merriam's kangaroo rat): 138826530
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Entry
138826530 CDS
T11079
Symbol
Htt
Name
(RefSeq) huntingtin isoform X1
KO
K04533
huntingtin
Organism
dmer Dipodomys merriami (Merriam's kangaroo rat)
Pathway
dmer05016
Huntington disease
dmer05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
dmer00001
]
09160 Human Diseases
09164 Neurodegenerative disease
05016 Huntington disease
138826530 (Htt)
05022 Pathways of neurodegeneration - multiple diseases
138826530 (Htt)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dmer03019
]
138826530 (Htt)
04131 Membrane trafficking [BR:
dmer04131
]
138826530 (Htt)
03029 Mitochondrial biogenesis [BR:
dmer03029
]
138826530 (Htt)
Messenger RNA biogenesis [BR:
dmer03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
138826530 (Htt)
Membrane trafficking [BR:
dmer04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
138826530 (Htt)
Mitochondrial biogenesis [BR:
dmer03029
]
Mitochondrial quality control factors
Regulator of mitochondrial biogenesis
Other regulator of mitochondrial biogenesis
138826530 (Htt)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Htt_C-HEAT
Htt_N-HEAT
Htt_bridge
Htt_N-HEAT_1
HEAT
HEAT_EZ
HEAT_EF3_N
Motif
Other DBs
NCBI-GeneID:
138826530
NCBI-ProteinID:
XP_069877856
LinkDB
All DBs
Position
Unknown
AA seq
3124 aa
AA seq
DB search
MATLEKLMKAFESLKSFQQQQQQQQQQQQSPPPPPPQSPQQPPQAQPPPPPPPPPPPLPP
PPGPAVAEEPLPRPKKELAATKKDRVNHCLTICENIVAQSLRNSPEFQKLLGIAMELFLL
CSDDVESDVRMVADECLNKVIKALMDSNLPRLQLELYKEIKKNGAPRSLRAALWRFAELA
HLVRPQKCRPYLVNLLPCLTRTSKRPEESVQETLAAAIPKIMASFGNFANDNEIKVLLKA
FIANLKSNSPTVRRTAAGSAVSICQHSRRTQYFYSWLLNVLLGLLVPVEEEHSTLLILGV
LLTLRYLVPLLQQQVKDTSLKGSFGVTRKEMEVSPSAEQLVQVYELTLHHTQHQDHNVVT
GALELLQQLFRTPPPELLQALTMPGGLGQLAAAQEEAQGRDRSGSIVELLAGGGSSCSPV
LSRKQKGKILLGEEEALEDDSESRSDVSSAAFAASVKGEIGGELAASPGVPAPGSVGHDI
ITEQPRSQHTLQADSVDLSGCDLTSAATDGDEEDILSHSSSQISAVPSDPALDLNDGTQA
SSPISDSSQTTTEGPDSAVTPSDSSEIVLDGADSQCPSMQLGQPQEDEGAECVLPGGDSS
AFRNSSLALQKVQLLESMGHSRQLSDSSVDKFVSRDEAPEPGDTETKPCRIKGDIGHSTD
DDSAPLVHCVRLLSASFLLTGKKNALVPDRDVRVSVKALALSCVGAAVALHPESFFSRLY
KAPLAPMDYPEEQYVSDILNYIDHGDPQVRGATAILCGTLICSILSRSRFHVGDWLGTIR
VLTGNRFSLADCIPLLRKTLKDESSVTCKLACTAVRHCVMSLCSSSYSDLGLQLLIDVLS
LRNSPYWLLRTELLETLAEIDFRLVSFLEAKAESLHRGAHHYTGLLKLQERVLNNVVIYL
LGDEDPRVRHVAAASLVRLVPKLFYKCDQGQADPVVAVARDQSGVYLKLLMHETQPPSHF
SVSTITRIYRGYSLLPSITDVTMENNLSRVIAAVSHELITSTTRALTFGCCEALCLLSAS
FPVCVWSLGWHCGAPPLSASDDSRKSCTVGMATMILTLLSSAWFPLDLSAHQDALVLAGN
LLAASAPKSLRSSWTSEEEANPTATRQEEVWPALGDRTLVPMVEQLFSHLLKVINICAHV
LDDVTPGPAIKAALPSLANPPSLSPIRRKGKEREPGEQASVPPSPKKGNEANTASRQSDS
SGPVTASKSSSVGSFYHLPSYLRLHDVLKATHANYKVTLDLQNSTEKFGGFLRSALDVLS
QILELATLQDIGKCVEEILGYLKSCFSREPMMATVCVQQLLKTLFGTNLASQFDSLSWNP
SKSQGRAQRLGSSSMRPGLYHYCFMAPYTHFTQALADASLRNMVQVEQEHDASGWFDVLQ
KVSTQLKTNLTSVTKNRADKNAIHNHIRLFEPLVIKALKQYTTTTSVQLQKQVLDLLAQL
VQLRVNYCLLDSDQVFIGFVLKQFEYIEVGQFRESEAIIPNIFFFLVLLSYERYHSKQII
GIPKIIQLCDGIMASGRKAVTHAIPALQPIVHDLFVLRGTNKADAGKELETQKEVVVSML
LRLIQYHQVLEMFILVLQQCHKESEDRWKRLSRQVADIILPMLATQQMHIDSHEALGVLN
TLFEILAPSSLRPVDMLLRSMFVTPSTMASVSTVQLWISGILAILRVLISQSTEDIVLSR
IQELSFSPYLISCPVINRLRDGDSSSTTGEHTERKQVKSLPEEIFSRFLLQLAGVLLEDI
VTKQLKVEMSEQQHTFYCQELGTLLMCLIHIFKSGMFRRITAAATKLFSSDSGEGSFYTL
ESLNARVRSMVPTHPALVLLWCQILLLVNHTDHCWWAEVQQTPKRHSLSCTKSLSPQMSD
EEDSDSAAQLGMCNREIVRRGALILFCDYVCQNLHDSEHLTWLIVNHIQDLISLSHEPPV
QDFISAIHRNSAASGLFIQAIQSRCENLSTPTTLKNTLQCLEGIHLSQSGAVLTLYVDRL
LGTPFRALARMVDTLACRRVEMLLAANLQSSMAQLPVEELNRIQEHLQSSGLAQRHQRLY
SLLDRFRLSTVQDSLSPLPPVTSHPLDGDGYMPLETVIPDKDWYLRLVRSQCWTKSDSAL
LEGAELVNHIPAEDMSVFMMSSEFNLSLLAPCLSLGMSEITCGQKSVLFEAARGVTLDRV
TGIVQQLPAVHQVFQPFLPTEPTGYWSKLNNLFGDATLYQTMTTLARALAQYLVVISKVP
THLHLPAEKERDTVRFVVMTLEALAWHLIHEQIPLSLDLQAGLDCCCLALQVPGLCSVIS
SAEFVTHVCSLIHCVRFLLEAIVVQPGDQLLSPESRLNTPTTVRAEKVDSDTQNPRCVAV
ACEMVAEMVESLQSVLALGHKRNGSVPAFLTAVLKNIVISLARLPLVNSYTRVPPLVWKL
GWSPKPGGDFGTVFPEIPVEFLQEKEIFKEFIYRINTLGWTSRTQFEETWATLLGVLVTQ
PLVLEQEESPPEEDMERTQIHVLAVQAITSLVLSAMTVPVAGNPAVSCLEQQPRNKPLKA
LDTRFGRKLSVIRGVVEQEIQAMVSRRENIATHHPYQAWDPVPSLSPATTGALISHDKLL
LQTNPERELGNMSYKLGQVSIHSVWLGNNITPLREEEWDEEEEEEADIPAPASPPVSPVN
SRKHRAGVDIHSCSQFLLELYSRWILPSSSARRTPVILISEVVRSLLVVSDLFTERTQFE
MMYLTLTELRRVHPSEDEILVQYLVPATCKAAAVLGMDKAVAEPVSRLLESTLRSSHLPS
QIGALHGILYVLECDLLDDTAKQLIPVVSDYLLSNLKGAAHCVNVHSQQHVLVMCATAFY
LIENYPLDVGPEFSASIIQMCGVMLTGSEDSTPSTIYHCALRGLERLLLSEQLSRLDTES
LVKLSVDRVNVHSPHRAMAALGLMLTCMYTGKEKASPGRASDPSPAAPDSESVIVAMERV
SVLFDRIRKGFPCEARVVARILPQFLDDFFPPQDVMNKVIGEFLSSQQPYPQFMATVVHK
VFQTLHSAGQSSMVRDWVMLSLSNFTQRTPVAMAMWSLSCFFVSASTSFWVSAILPHLIS
RMGKLEQVDVNLFCLVATDFYRHQIEEEFDRRAFQSVFEVVATPGGPYHRLLTCLRNVHK
VTAC
NT seq
9375 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccctggagaagctgatgaaggccttcgaatccctcaagtcgttccagcagcag
cagcagcaacagcaacagcaacagcagtcgccgccgccgccgccgcctcagtctcctcag
cagccgccgcaggcgcagccgcctcccccgccgccgccgccgccgcccccgctgccgccg
ccgcccggccccgccgtggccgaggagccgctgccccgaccaaagaaggaacttgcagcc
accaaaaaagaccgggtgaatcattgtctgacaatatgtgaaaacatagtggcacaatct
ctcagaaattctccagaatttcagaaacttctgggtatcgctatggaactttttctgctg
tgtagtgatgatgtggagtcagatgtcaggatggtggctgatgaatgcctcaacaaagtt
ataaaagctttgatggattctaatctgccaaggctacagttagaactctataaggaaatt
aaaaagaatggggcccctcgaagtctgcgtgctgccctttggaggtttgctgagctggct
cacctggttcgacctcagaaatgcaggccttacctggtgaatctcctgccatgcttaact
cgaacaagcaagagacctgaggaatcggtccaggagaccttggctgcagctattcccaaa
attatggcttcttttggcaattttgcaaatgacaatgaaattaaggtcctgttaaaggct
ttcatagcaaatctgaaatcaaattcccccactgtccgtcgcaccgcagctggctctgca
gtgagtatctgccagcactccaggaggactcagtacttctacagctggcttctgaatgtg
ctcctaggtctgctggtacctgtggaggaagagcactccacactcctgatcctcggcgtg
ctgctcacattgaggtatctggtgcctttactacagcagcaggtcaaggacacaagcctg
aaaggcagctttggggtgacacggaaagaaatggaagtctctccttctgctgagcagctt
gtccaggtgtatgaactgactttgcatcacacgcaacaccaagaccacaatgtggtgaca
ggagcactggagctcctacagcagctcttccgcaccccaccgccggagctgctgcaggca
ctgaccatgccaggtgggcttggacagctggctgcagctcaagaggaggcccagggccga
gaccgcagcgggagcattgtggaacttctagccggagggggttcttcatgcagccctgtc
ctttcaaggaagcaaaaaggcaaaatactgttaggagaagaagaagctctggaagatgac
tcagaatcaagatctgacgtcagcagcgcagcctttgcagcctcagtgaagggtgagatc
ggtggagagctggctgcctctccgggggtccccgctcctgggtctgtgggtcatgacatc
attacggagcagcctcggtcacagcacacgctgcaggcagactctgtggacctctctggc
tgtgacttgactagtgctgccaccgatggagatgaggaggacatcttgagccacagctcc
agccagatcagtgcagttccatctgaccctgctctggacctaaatgatgggacccaggcc
tcctcacctatcagtgacagctcccagaccaccactgaagggcctgactcagccgtgaca
ccctccgacagttctgaaattgtgttagatggtgctgacagccagtgccccagcatgcag
ctcggccagccgcaggaggacgagggagctgagtgtgttcttcctggtggagactcgagt
gctttcagaaattcctccctggcacttcagaaggtacagttattggagagcatgggtcac
agcaggcagctttctgacagcagtgtcgataaatttgtgtcaagagatgaagcacctgaa
ccaggcgacacagagaccaagccttgccgaatcaaaggtgatatcggacactctactgat
gatgattctgctcctctggtccattgtgttcgccttttatcggcatcattcttgttaact
gggaaaaagaatgccctggttccagacagagacgtgagggtcagtgttaaggctctggcc
ctcagctgtgttggagcagccgtggcccttcatccggagtcttttttcagcagactttat
aaagcaccccttgctcccatggattaccctgaggagcagtatgtctcagacatcttgaac
tatattgatcatggagacccacaggtcagaggagccactgccattctctgtgggacactc
atctgctccatcctcagccgctcccgcttccatgtgggggactggcttggcaccatcaga
gtcctaacaggaaatagattttctttggcagactgcattcctttgctgaggaaaactttg
aaggatgagtcttctgttacctgtaagctggcctgtacagctgtgaggcactgtgtcatg
agtctctgcagcagcagctacagtgacctgggattacagctgctcattgatgtgctgtct
ctgaggaatagcccctactggctgctgaggacagagctgttggagactcttgctgagatt
gacttcaggctggtgagctttttggaggcaaaagcagaaagcttgcacagaggggctcat
cattacacagggcttttaaaactgcaagaacgagtcctcaataatgtggtaatctatttg
cttggggatgaagaccccagggtgcgacatgttgctgcagcttcattagtaaggttggtt
ccaaagctgttttataaatgtgaccaaggacaggcagatcccgtagtggctgtggcaaga
gatcaaagtggtgtttacctgaagctgctcatgcacgagacacagcctccgtcgcacttc
tctgtcagcaccattaccagaatatatagaggttatagcttactaccaagcataacagat
gtcaccatggaaaataacctgtcaagagttattgctgcagtttctcatgagctgatcaca
tcaaccactagggcactcacatttggatgctgtgaagctttgtgtcttctttctgcatct
tttccagtttgtgtctggagtttaggttggcattgtggagcgcccccactcagcgcctct
gacgactctagaaaaagctgtaccgtggggatggccaccatgattctcaccttgctctcg
tcagcttggttcccattggatctctcagcccatcaagacgccttggttttggctggaaac
ttgcttgcagccagtgcccccaagtctctgagaagttcatggacctctgaagaagaagcc
aacccaacagccaccagacaagaggaggtgtggccagcgttaggtgaccggacactggtg
cccatggtcgagcagctcttctcccacctgctgaaggtgatcaatatctgtgctcacgtc
ttggatgatgtgactccggggccagcaattaaggcagccttgccttctctagcaaacccc
ccttccctaagtcccatccggcgaaaggggaaggagagagaaccaggagaacaggcatct
gttccaccgagtcccaagaaaggcaatgaggccaatacagcctctcgacaatcagattcc
tcaggccctgtcacagcaagtaaatcttcctcagtgggcagtttctaccatctcccatcc
tacctcagactgcatgatgtcctgaaggccactcacgccaactacaaggtcactttggat
cttcagaacagcactgagaagtttggggggttcctgcgctctgccttggacgttctttct
cagattctagagctggcgacactgcaggacattgggaagtgtgttgaagagatccttggt
tacctgaaatcgtgttttagtcgagagccaatgatggcaacggtttgcgttcagcagcta
ctgaagacactctttggaacaaacttggcttcccagtttgacagcttatcttggaacccc
agcaagtctcaaggccgagcccagcgcctgggctcttcgagtatgagaccaggcttgtat
cactactgcttcatggctccatacacccacttcacacaagccctggcagatgccagcctg
aggaacatggtacaggtggagcaggagcatgatgcctcgggatggtttgatgtactccag
aaagtgtccacccaattgaagactaacctcacgagcgtcacaaagaatcgagctgataag
aacgctattcacaaccacattcgtttatttgaaccccttgttataaaagctttaaaacag
tacaccactacaacatctgtgcagttgcagaagcaggttttggatttgctggcacagctg
gttcagctacgggtcaattactgtctcctggattcagatcaggtgttcattggatttgtg
ttgaaacaatttgaatacatcgaagtaggccaattcagggaatcagaggcaattattcca
aacatctttttcttcctggtattactatcttatgagcgctaccattcaaaacagatcatc
gggattcctaagatcattcagctgtgcgacggcatcatggccagtgggaggaaggctgtg
acacatgccataccagctctgcagcccatagttcatgacctctttgtgttaaggggaaca
aataaggctgatgcaggcaaagagcttgaaacccagaaggaagtggtggtgtcgatgttg
ttgagactcatccagtaccatcaggtgctggagatgttcatccttgtcctgcagcagtgc
cacaaagagagtgaggacaggtggaagcgcttatctcggcaggtcgccgacatcatcctg
cctatgttagccacgcagcagatgcatattgattctcatgaagcccttggagtgttaaat
accttatttgagattttggccccttcctccctccgtcctgtggacatgcttttgcggagt
atgtttgtcacgccaagtacaatggcatctgtgagcactgttcaactgtggatatctgga
atcctagccattctgagggttctcatttcccagtcaactgaagatattgttctttctcgt
attcaggagctctccttctctccctatttaatctcctgtccagtaattaaccgtttaaga
gatggagacagtagctcaacaacgggagaacacactgaaaggaaacaagtgaagagtttg
ccagaagaaatattctcaaggtttctgttacagctggctggtgttcttctagaggacatt
gttacaaagcaactgaaagtggaaatgagtgaacagcagcatactttctactgccaggaa
ttaggcacactgctcatgtgcctcatccacatcttcaagtctggaatgttccggagaata
acagcagctgccactaaactcttcagcagcgacagtggtgagggcagcttctacacccta
gagagtctgaacgcgcgcgtgcgctccatggtgcccacgcacccggccctggtgctcctc
tggtgccagatcctgctgcttgtcaaccacacagaccactgctggtgggcagaggtgcaa
cagactcccaagagacacagtctatcctgcacaaagtcgctcagcccccagatgtctgac
gaggaggattctgactcagcagcccaacttggaatgtgcaacagagagattgtgcgaagg
ggagccctcattctcttctgtgattatgtctgtcagaacctccatgactcagagcaccta
acgtggctcattgtgaatcacattcaagatctgatcagcctgtcccatgagcctccagtc
caggactttattagtgcaattcatcggaattctgccgccagtggcctttttatccaggca
atccaatctcgttgtgaaaatctttcaacgccaaccactctgaagaacacgctgcagtgc
ttggaaggcattcacctcagccagtcgggcgctgtgctcacactgtatgtggacaggctc
ctgggcacccccttccgcgcactggctcgcatggttgacaccctggcctgccgccgggta
gaaatgcttttggctgcaaatttacagagcagcatggcccagttaccagtagaagagctg
aacagaatccaggagcatctccagagcagtggtctcgcgcagagacatcaaaggctctat
tccctgctggacaggttccgactctccactgtgcaagattccctcagccccctacctccg
gtcacttcccacccgctggacggggatgggtacatgccactggaaacggtgattccagac
aaagactggtacctccgtctggtcagatcacaatgttggaccaagtcagattctgcactg
ctggaaggtgcagagctggtgaatcacatccctgctgaagacatgagcgtgttcatgatg
agctcggagttcaacctaagcctcttggctccatgcctgagcctcggcatgagcgagatc
acgtgtggccagaagagtgtcctttttgaagctgctcgtggggtgactctggaccgtgtg
actggcatcgtccagcagcttcctgctgtccatcaggtcttccagcctttcctgcccaca
gagcccacaggctactggagcaagctgaataatctatttggggatgccacattataccag
accatgaccacgctggctcgggccctggcgcagtacctagtagtgatctccaaagtgccc
acccatttgcaccttcctgctgagaaggagagggacacagtgaggttcgtggtgatgacc
ctcgaggccctggcatggcatttgatccacgagcagatcccactgagtctggacctccaa
gcggggctggactgctgctgcctggcactgcaggttcctggcctctgcagtgtgatctcc
tctgcagagtttgtgacccacgtctgctctctgatccactgtgtgcgattcctccttgaa
gctattgtggtacagcctggagaccagcttcttagtccagaaagcagactgaacactcca
actaccgtcagagcggagaaggtggactcagacacacaaaaccccaggtgtgtggctgtg
gcctgtgagatggtggccgagatggtggagtctctgcagtcagttctggccttaggccac
aagaggaatggcagcgtgcccgcatttctcacagccgtgctgaagaacattgtcatcagc
ctggcccgcctcccccttgtcaacagctacacccgtgtgcccccactggtgtggaaactc
ggatggtcgcccaaaccaggaggggattttggcaccgtgtttcctgagatccctgtggag
ttcctccaggagaaggaaatcttcaaagagttcatctaccgcatcaacaccctggggtgg
actagtcggactcagtttgaagaaacttgggccactctccttggtgtcctggtgacgcag
ccgcttgtgctggagcaggaggaaagcccaccagaggaagacatggagaggacacagatc
cacgtgctggccgtgcaggccattacctccctggtgctcagtgccatgactgtgcctgtg
gctggcaaccccgctgtgagctgcttggaacaacagccgaggaacaaacccctgaaagca
ctcgacaccaggttcgggagaaagttgagcgtgatcaggggggttgtagagcaggagatt
caagccatggtttctcggagagaaaacatcgccacccatcacccttaccaggcctgggat
ccggtcccctccctgtccccggctactacaggtgccctcatcagccacgacaagctgctg
ctgcagaccaacccggagcgcgagctgggcaacatgagctacaagctgggccaggtatct
atacactcggtgtggctggggaacaacatcacaccattgagagaggaggaatgggatgag
gaggaggaggaggaagctgatatccccgcaccagcatctcctcccgtgtctccagtcaac
tccaggaagcaccgggctggagtcgatatccactcgtgctcgcagtttttgcttgaatta
tacagccgatggatcctgccgtccagctctgccagaaggaccccggtcatcctcatcagt
gaagtggttcgatcgcttctcgtggtctcagacttgttcaccgaacgcacccagtttgag
atgatgtacctgacgctgacagagctgcgtagggtgcacccttcagaagatgagatcctt
gttcagtacctggtgcctgccacctgcaaggcagccgctgtgctcggcatggacaaggct
gtggcagagccggtcagccgtctgctggagagcacactcaggagcagccacctgcccagc
cagatcggagccctgcatggcatcctgtacgtgttggagtgtgacctcctggatgacacc
gcgaagcagctcatcccggtcgtcagcgactatctcctgtctaacctcaaaggggcagcc
cactgcgtgaacgttcacagccagcagcacgtgctggtgatgtgtgccaccgcgttctac
ctaatcgagaactatcctctagatgtggggccggagttttctgcatctataatacagatg
tgtggagtgatgctgaccggcagcgaggactccaccccgtccaccatttaccactgcgcc
ttgcgcggcctggagcgcctcctgctgtcggagcagctctcccggctggacacagagtcc
ctggtcaagctgagtgtggacagggtgaacgtgcacagcccgcaccgggccatggcagcg
ctcggcctgatgctcacctgcatgtacacaggaaaggagaaagccagtccaggcagagcc
tcggaccccagccctgcagccccagatagtgagtccgtgatcgtcgctatggagcgcgtg
tctgttctcttcgacaggatcaggaaggggtttccttgtgaagccagggtggtggcaagg
atcctgcctcagttcctggacgacttcttcccgccccaggatgtcatgaacaaagtcatc
ggagagtttctatccagccagcagccgtacccgcagttcatggccaccgtggtgcacaag
gtgttccagactctgcacagcgcgggacagtcatcgatggtccgggactgggttatgctg
tccctgtccaacttcacgcagagaacgcctgtcgccatggccatgtggagcctctcctgc
ttttttgtcagcgcgtctaccagcttctgggtttcagccatccttccacacctcatcagc
aggatgggcaagctggagcaggtggatgtgaaccttttctgcctggttgccacagacttc
tacagacaccagatagaggaggagtttgatcgcagggccttccagtctgtgtttgaagtg
gtagccacaccaggaggcccgtatcatcggctacttacgtgtttgcgaaatgtccataag
gtcaccgcctgctga
DBGET
integrated database retrieval system
