Dipodomys merriami (Merriam's kangaroo rat): 138826981
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Entry
138826981 CDS
T11079
Symbol
Col25a1
Name
(RefSeq) collagen alpha-1(XXV) chain
KO
K24356
collagen type XXV alpha
Organism
dmer Dipodomys merriami (Merriam's kangaroo rat)
Pathway
dmer04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
dmer00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
138826981 (Col25a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
dmer00536
]
138826981 (Col25a1)
Glycosaminoglycan binding proteins [BR:
dmer00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
138826981 (Col25a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
138826981
NCBI-ProteinID:
XP_069878541
LinkDB
All DBs
Position
Unknown
AA seq
671 aa
AA seq
DB search
MLGKKPAGKGAGREAGSDEHSPSGGRARPPSAILATLLSGVALVSCLYLGVKTNDLQARI
VALESAKGAPSLPLLPETADQLKAIVQENVERLLAQKSYEHMAKIRIAREAPSECNCPAG
PPGKRGKRGRRGESGPAGQPGPQGPPGPKGDKGEQGDQGPRGLPGFPTVAALHSNQIVTV
KGDQGQAGPPGPPGPPGPRGPPGDTGKDGPRGMPGVPGEPGKPGEQGLMGPLGPPGQKGS
IGTPGIPGMNGEKGEPGLPGAAGQNGLPGLKGEPGEQGEKGDAGENGPKGEAGEKGDPGS
SAAGIKGEPGESGRPGQKGEPGLPGLPGLPGIKGEPGFIGPQGEPGLPGLPGTKGERGEA
GAPGRGERGDPGAPGPKGDRGDKGDSGALGPRGPPGQKGDQGATEIIDYNGNLHEALQRI
TTLTVTGPPGPPGPQGLQGPKGEQGSPGIPGVDGEQGLKGSKGDTGDPGMPGEKGGIGLP
GLPGANGVKGEKGDSGLPGPQGPSIIGPPGPPGPHGPPGPMGPHGLPGPKGDPGLNGVKG
LKGEAGQKGDRGPLGLPGASGLDGKPGSRGTDGPMGPHGPAGPKGERGEKGAMGEPGPRG
PYGLPGKDGEPGLDGFPGPRGEKGDIGEKGEKGFRGVKGEKGEPGQPGLDGLDAPCQLGP
DGLPMPGCWQK
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atgctggggaagaagcccgcggggaagggagcggggcgcgaggccggctcggacgagcac
agcccctccggggggcgcgccaggcccccgagcgccatcctggccaccctgctctccggg
gtggccctggtttcctgtctgtacctcggggtgaagaccaacgacctccaggcgaggatc
gtcgctctggaatccgcgaaaggggcgccttccttgcccctgctgcccgagacggcggat
cagctgaaggccatagtgcaggagaacgtagagcggctcctggctcagaaatcctatgaa
catatggctaaaataagaatcgcaagagaggcgccttcagagtgcaactgtccagcaggt
cctccagggaaacgagggaagaggggccgaagaggagaatctggtcctgctggtcaaccg
ggtccacagggtccccctggtccaaaaggggataagggggaacaaggtgatcaggggcct
cggggcctgccaggcttccccacagtggctgccctgcacagcaatcagatcgtcaccgtc
aagggtgatcaaggacaggccgggcctcccgggcccccgggccccccagggccaagaggg
ccccctggggacacagggaaagatggcccccgaggcatgccaggagtgcccggagaacca
gggaagccaggagaacaaggcttgatgggtcctctggggcctccaggacaaaagggctcc
attggaacacccggaattccaggcatgaatggagaaaagggtgaacctgggttgcctgga
gcagcaggacagaatggacttccgggactgaagggagaacctggagagcaaggagaaaag
ggagatgctggagaaaatggccccaaaggtgaagcaggtgaaaagggtgaccccggatca
tctgctgcaggaattaagggagaaccaggagagtccggccgtccagggcagaagggtgaa
ccaggccttcctgggctccctggacttccgggaataaagggagaacccggcttcattgga
cctcaaggggaaccaggcttaccagggttaccaggaacaaaaggtgaacgtggggaggcc
ggggctcctggaagaggtgagcgaggagatcctggagctcctggacccaagggggatcgt
ggagacaaaggggactctggagctctgggcccaaggggtccacctgggcaaaaaggggac
caaggagccaccgagatcatagactacaatggcaatctgcacgaagccctccagaggatt
accaccctaactgtcacgggcccccctggacctcctgggcctcaaggactacaagggcca
aagggggaacagggatctccaggaatcccaggagttgatggagagcagggactcaaaggc
tcgaagggggacacaggggacccaggcatgccaggtgaaaaaggaggaattggactccca
ggattgccgggtgccaatggagtgaaaggagagaaaggagactctggtttgccaggtcct
cagggtccttctatcataggcccccctggccctccaggtccccatggcccacctggcccc
atgggaccccatggacttcctggaccaaagggtgacccagggttaaatggtgttaaagga
ttgaagggtgaagcaggtcaaaagggagacagaggcccccttggtcttccaggagcatct
ggcttagacgggaagccaggatcccggggtacagatggtcctatgggaccccacggccct
gcaggtcccaaaggagaaagaggggaaaaaggcgccatgggagaacctggacccagaggg
ccctacggcctacctgggaaagatggagagcctggtcttgatggcttccctggtccacgg
ggtgaaaagggagacataggtgaaaagggagaaaagggattccgtggcgttaagggggaa
aaaggggagccaggccagcctgggctggatgggctggatgctccttgccaattgggacca
gatggattgcccatgcctggctgctggcagaagtga
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