Dipodomys merriami (Merriam's kangaroo rat): 138827533
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Entry
138827533 CDS
T11079
Symbol
Prpf40a
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
dmer Dipodomys merriami (Merriam's kangaroo rat)
Pathway
dmer03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dmer00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
138827533 (Prpf40a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dmer03041
]
138827533 (Prpf40a)
Spliceosome [BR:
dmer03041
]
Complex A
U1 snRNP components
U1 related factors
138827533 (Prpf40a)
Complex B
138827533 (Prpf40a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
WW_2
Motif
Other DBs
NCBI-GeneID:
138827533
NCBI-ProteinID:
XP_069879230
LinkDB
All DBs
Position
Unknown
AA seq
990 aa
AA seq
DB search
MQATPSEAEAEGESPQSCVSTAHSDWTIEKSVSLLAPLIPPRNSGQPLPFGPSERQPLRS
LLVGMCSGSGRRQSSLSPTMRPGTGAERGGLMMGHPGMHYAPMGMHPMGQRANMPPVPHG
MMPQMMPPMGGPPMGQMPGMMSSVMPGMMMSHMSQASMQPALPPGVNSMDVAAGTASGAK
SMWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSDSGKPYYYNSQ
TKESRWAKPKELEDLEGYQNTIVAGGLITKSNLHAMIKAEESSKQEECTTASTAPVPTTE
IPTTMSTMAAAEAAAAVVAAAAAAAAAAAAANASTSSNTVGSVPVVPEPEVTSIVATVVD
NENTVTISTEEQTQLTNTTAIQDPSVEVSSNTGEETSKQETVADFTPKKEEEESQPAKKT
YTWNTKEEAKQAFKELLKEKRVPSNASWEQAMKMIINDPRYSALAKLSEKKQAFNAYKVQ
TEKEEKEEARSKYKEAKESFQRFLENHEKMTSTTRYKKAEQMFGEMEVWNAISERDRLEI
YEDVLFFLSKKEKEQAKQLRKRNWEALKNILDNMANVTYSTTWSEAQQYLMDNPTFAEDE
ELQNMDKEDALICFEEHIRALEKEEEEEKQKSLLRERRRQRKNRESFQIFLDELHEHGQL
HSMSSWMELYPTISSDIRFTNMLGQPGSTALDLFKFYVEDLKARYHDEKKIIKDILKDKG
FVVEVNTTFEDFVAIISSTKRSTTLDAGNIKLAFNSLLEKAEAREREREKEEARKMKRKE
SAFKSMLKQATPPIELDAVWEDIRERFVKEPAFEDITLESERKRIFKDFMHVLEHECQHH
HSKNKKHSKKSKKHHRKRSRSRSGSDSDDDDSHSKKKRQRSESRSASEHSSSAESERSYK
KSKKHKKKSKKRRHKSDSPESDTEREKDKKEKDRESEKERTRQRSESKHKSPKKKTGKES
GNWDTSGSELSEGELEKRRRTLLEQLDDDQ
NT seq
2973 nt
NT seq
+upstream
nt +downstream
nt
atgcaggcgacgccgagcgaggctgaggctgagggcgaatcaccacagagctgcgtgtcg
accgcgcactctgattggacaattgagaagtctgtcagcttattggccccgctgatcccg
cctcgtaactcagggcagcctttaccctttggcccgagcgagcgccagccactcagatcg
cttcttgttggtatgtgcagcggcagtggccgccggcagagcagtctgagcccgacgatg
aggccgggaacgggagctgaacgtggaggcctcatgatgggccaccctggcatgcattat
gcaccaatgggaatgcaccctatgggtcagagagcaaatatgcctcctgtacctcatgga
atgatgccacaaatgatgcctcctatgggagggccgccaatgggacaaatgcctggaatg
atgtcatcagtaatgcctggaatgatgatgtctcatatgtctcaggcttccatgcaacct
gccttaccgcccggagtaaatagtatggatgtagcagcaggtacagcatctggcgcaaaa
tcaatgtggacagaacataaatcacctgatggaagaacttactactacaatactgaaaca
aagcagtctacctgggaaaaaccagatgatcttaaaacacctgctgagcaactgttatct
aaatgtccctggaaagagtacaaatctgattctggaaagccttattattataattctcaa
acaaaagaatcccgctgggccaaacctaaggaacttgaggatcttgaaggataccagaat
accattgttgctggaggtcttattacaaaatcaaacctgcatgccatgattaaagctgag
gaaagcagcaaacaagaggagtgtaccacggcatcaacggccccagtccctacaacagaa
attcccaccactatgagcaccatggctgctgccgaagcagctgcagctgttgttgctgca
gcagctgcagctgcagcagctgctgcagcagcaaatgcttccacttcttctaatactgtg
ggaagtgttccagttgttcctgaaccagaagttacttccattgttgctactgttgtagat
aatgaaaatacagtgactatatcaactgaggaacaaacacaacttactaataccacagct
attcaagatccaagtgttgaagtatccagtaatactggagaagaaacatcaaagcaagaa
actgtagctgattttactcccaaaaaagaagaagaagagagccagcctgcaaaaaagaca
tatacttggaatacaaaggaggaggccaagcaagcatttaaagaattattgaaagaaaag
cgggtaccatccaatgcttcatgggaacaagctatgaaaatgatcattaatgatccacga
tacagtgctttagcaaagttgagtgaaaagaagcaagcttttaatgcctataaagtccag
acagagaaagaagagaaagaagaagcaaggtcaaaatataaagaggctaaggaatcgttc
cagcgttttcttgaaaatcatgagaagatgacttccacaaccagatacaagaaagcagag
caaatgtttggagagatggaggtctggaatgcaatatcagaacgtgatcgtcttgaaatc
tatgaagatgtcttgttctttctgtcaaaaaaagaaaaggaacaagcaaagcaattacga
aagaggaattgggaagccttaaaaaacattcttgacaacatggctaatgtaacttactct
actacttggtctgaagcccagcagtatctgatggataatccaacttttgcagaagatgag
gagttacagaacatggataaagaagatgcattaatttgctttgaagaacacattcgagct
ttagaaaaggaagaagaagaagaaaaacagaagagtttgctgagagaaaggagacgacag
cgtaaaaatagggaatcttttcagatatttttagatgaattacatgaacatggacaacta
cattctatgtcgtcttggatggaattgtatccaactattagttctgacattagattcact
aatatgcttggtcagcctggatcaactgcacttgatcttttcaagttttatgttgaggat
cttaaagcacgttatcatgatgaaaaaaagataataaaagacattctaaaggataaagga
tttgtagttgaagtaaatactacttttgaagattttgtggcaataatcagttcaactaaa
agatcaactactttggatgccggaaatatcaagctggctttcaatagtttgctggaaaag
gcagaggcccgagaacgtgaaagagaaaaagaggaagctcggaaaatgaaaaggaaagaa
tctgcattcaagagcatgttgaaacaagctactcctccaatagagttggatgctgtctgg
gaagatatccgggagagatttgtaaaagagccagcatttgaagacataactctagaatct
gaaagaaagagaatatttaaagattttatgcatgtgcttgagcatgaatgtcaacatcat
cattcaaagaacaagaaacactctaaaaagtcaaaaaaacatcataggaaacgctcccgc
tctcgatcgggatcagattcagatgacgatgacagtcattcaaagaaaaaaagacagcga
tcagagtcccgttccgcttctgaacattcttctagtgctgagtctgagagaagttacaag
aagtcaaaaaagcataagaagaaaagcaaaaagaggagacataaatctgactctcctgag
tcagatactgaaagagagaaggataaaaaggaaaaagaccgggaaagtgaaaaagaaaga
actagacaaagatcagaatcaaaacacaaatcacctaagaaaaagacgggaaaggaatct
ggtaattgggatacttctggcagtgaactgagtgaaggggaattagaaaaacgcagaaga
acccttttggaacaactggacgatgatcaataa
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