Dipodomys merriami (Merriam's kangaroo rat): 138828215
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Entry
138828215 CDS
T11079
Symbol
Skic2
Name
(RefSeq) superkiller complex protein 2 isoform X1
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
dmer Dipodomys merriami (Merriam's kangaroo rat)
Pathway
dmer03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dmer00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
138828215 (Skic2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dmer03019
]
138828215 (Skic2)
Enzymes [BR:
dmer01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
138828215 (Skic2)
Messenger RNA biogenesis [BR:
dmer03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
138828215 (Skic2)
mRNA degradation factors
3'-5' decay
Ski complex
138828215 (Skic2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Ski2_N
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
DUF3516
Motif
Other DBs
NCBI-GeneID:
138828215
NCBI-ProteinID:
XP_069880181
LinkDB
All DBs
Position
Unknown
AA seq
1245 aa
AA seq
DB search
MMETERLVLPPPDPLNLPLRAVELGCTGRWEVLNVPGAAESTLPHGLPPCAPDLQQEAEQ
LFLSSPAWLPLHDVEHSARKWQRKTDPWSLLAALGAPVPSDLQAQRHPTTGQILGYKEVL
LENTNLSATTSLSLRRPPGPISQSLWGNPTQYPFWPGGMDEPTITDLSTREEAEEDIDFE
KDLLTVPPGFKKGMDFAPKDHPAPAPGLLSLSRLLEPLDLGGDEDESETVGQPGGPRGDT
ISASLCDAPLARASSLEDLVLKEASTVVCPVEPPKPPPQEEWAIPVDVTSPVGDFYRLIP
QPAFQWAFEPDVFQKQAILHLEQHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSP
IKALSNQKFRDFRNTFGDVGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIRDLEWVI
FDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQIYVISTV
ARPVPLEHYLFTGNSPKTQGELFLLLDSRGAFHTKGYYAAVEAKKERMSKHAQTFGAKQP
THQSGPAQDRGVYLSLLASLRTRAQLPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEIH
LFLQRCLARLRGSDRQLPQVLHMSELLHRGLGVHHSGILPILKEIVEMLFSRGLVKVLFA
TETFAMGVNMPARTVVFDSMRKHDGSTFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCKG
RVPEMADLHRMMMGKPSQLQSQFRLTYTMILNLLRVDALRVEDMMKRSFSEFPSRKDSKA
HEQALAELTKRLGALEEPDTTGQLVDLPEYYSWGEELMETRNMIQRRIMESVNGLKALSV
GRVVVVKNQVHHNALGVILQVSSNSSSRIFTTLVLSEKPMSEDPQDKEAATPDVPHPDDL
VGFKLFLPEGACDHTVAKLQPGDVAAITTKVLRVNGEKILEDFSKRQQPKFRKDPPLAVV
TTAVQELLRLAQAYPAGPPTLDPVNDLQLKDVSVVEGGLRARKLEELVRGAQCVHNPRFP
AQYLKLRERMQIQKEIERLRFLLSDQSLLLLPEYHQRVEVLRTLGYVDEAGTVKLAGRVA
CAMSSHELLLTELMFDNALSALKPEEIAALLSGLVCQSSGDPGDQLPSTLKQGVERVCAV
AKRIGEVQVACGLNQTVEEFVGELNFGLVEVVYEWARGMPFSELAGLSGTPEGLVVRCIQ
RLAEMCRSLRGAARLVGEPVLGAKMETAATLLRRDIVFAASLYTQ
NT seq
3738 nt
NT seq
+upstream
nt +downstream
nt
atgatggagaccgagcgactcgtgttgcctcccccagatcctctgaatcttccccttcga
gccgtggaactgggatgcactgggcgctgggaggtgctgaatgtgcctggagctgcagag
agtacccttccccatggccttcctccttgtgccccagatctgcagcaagaagcagagcag
ttgtttctctcatctccagcttggcttcctctgcatgatgtggaacattcagctcgaaaa
tggcagaggaagacagatccctggtctctcctggctgctctgggagccccagtcccatct
gatcttcaggcccaaagacacccaaccacaggccagatattaggctataaggaggtcctg
ctggagaacacaaacctgtcagcgactacttccttgtctcttcgccggcctccagggccc
atctctcagtcactatgggggaatccaacacagtaccctttctggccaggtgggatggat
gagcctaccataacagatctgagcactcgggaggaggctgaggaagatatagattttgag
aaagatcttctcactgtcccacctggcttcaagaaaggcatggactttgccccaaaggat
cacccagctccagcacctgggctacttagcctcagtcgtctgctagaacctctagatctg
gggggtgatgaggatgaaagtgagacagtgggacagccaggaggtcccagaggggacact
atttcagcctctctctgtgatgctcctctggcccgagcaagcagcttggaggacctagtg
ttgaaggaagcgtctacagttgtatgccctgtggagcctcccaaacctccacctcaggag
gaatgggccattcctgtggatgtcacctcccctgttggtgatttctaccgcctcattcca
cagccagcctttcagtgggcgtttgagccagatgtgtttcagaaacaggccatcctgcac
ttggaacagcatgactctgtctttgttgcagcgcacacatctgcagggaagacagtagta
gctgaatatgccattgcactggcccagaaacatatgacacgaaccatttatacttcaccc
atcaaggccttgagcaaccagaaattccgagactttcgaaacacatttggggatgtgggg
ctactcactggggatgtgcagctgcacccagaagcctcctgccttatcatgacaacagag
atccttcgctccatgctgtacagtggatcagatgtcatccgggacctggaatgggtcatc
ttcgacgaggttcattatatcaacgatgctgagcgtggggtcgtgtgggaggaggtgctc
atcatgttgccagaccatgtctccatcatccttctgagtgccactgtccccaacgcccta
gagtttgctgactggattggacggctgaagcgtcgccagatctatgtgattagcacggtt
gcccggcctgtccccctggagcactatctcttcacaggaaacagccccaagacccagggg
gaactcttcttgctgctggattcccgaggtgccttccacaccaaagggtactatgcagct
gtggaggccaagaaggagagaatgagcaaacatgctcagacctttggggccaagcagccc
acacaccagtcagggcctgcgcaggaccgaggagtgtacctgtccctcctggcctcactc
cgcacccgggcccagctgcctgtggtagtgttcaccttctctcggggccgttgtgatgag
caggcctcgggcctcacctcgcttgacctcactacaagttcagagaagagtgagatccac
ctctttctgcagcgctgtctggcgcgtctccgtggctctgaccgacagctgccccaggtc
ctgcacatgtctgagctcctgcatcggggcttgggtgtacaccacagtggcatcctgccc
atcctcaaggagattgtggagatgctgttcagccgtggcttggtcaaggtcttgtttgcc
actgagacctttgccatgggcgtaaacatgccagcacgtacagtggtgtttgactccatg
cgcaagcacgatggctccaccttccgggacctgctccctggggagtacgtgcagatggca
ggccgggcaggccggagaggcctggaccccacaggcactgtcatcttgctctgcaagggt
cgtgtgcctgagatggcagatctacaccgcatgatgatggggaagccttcccagctgcag
tcccagttccgcctcacatatactatgatcctcaacctgctacgggtggatgccctcagg
gtggaggacatgatgaagaggagtttctctgagtttccatcccgcaaagacagcaaggcc
catgagcaggctctagctgaactaactaaaaggttgggggccttggaggagcctgacaca
actggccaactggttgatctgcctgagtattacagctggggagaggaactgatggagacc
cggaatatgatccaacgacgcatcatggagtctgtgaatgggctaaaagctctctcagtg
ggaagagtggtggttgtgaagaatcaggtgcatcacaacgcattgggtgtgatcctgcag
gtctcctcaaactcctccagcagaatcttcacaaccctggtcttaagtgaaaagcctatg
tcggaggatccacaggacaaggaagcagccactccagatgtgccccacccagatgacctg
gtgggcttcaagctcttcttgcctgaaggggcctgtgaccacactgtggccaagctccag
ccaggagatgtggctgcaatcaccaccaaggtgcttcgagtaaatggggagaagatctta
gaggatttcagcaagagacagcaaccgaaattcagaaaggatcctccccttgcagtggtg
accactgctgtccaggaattgcttcgtctggctcaggcctacccagcaggaccccctacc
cttgaccctgtgaatgacttgcagctcaaggatgtgtcagtggtagaaggtggccttcgg
gcccggaagttggaggagctggtccggggggctcagtgtgtgcacaatccccgttttcct
gcccagtacctgaagctgagggagcgaatgcagattcagaaggagatagagcgcctgcgc
ttcctactgtcagatcagtcactgctgctgctccccgagtaccaccaacgagtagaggtg
ctccgaaccctgggttatgtggacgaggcaggcactgtgaagctggcaggacgggtggct
tgtgccatgagcagccatgagctgctcctcactgagctcatgtttgacaatgcattgagc
gctctgaagcctgaggagattgcagccctgctctctggcctggtttgccagagctctggg
gaccctggggatcagcttccaagcaccctcaaacagggtgtggaacgtgtctgtgctgtg
gccaagcggattggtgaagtccaggtagcctgtggcttgaaccagacagtggaagaattt
gtgggagagctgaattttgggctggtcgaggttgtgtacgagtgggcccggggtatgccc
ttctctgagttagcaggactctcgggaaccccagaaggcctggtggtgcgctgtatccag
cgcctggctgagatgtgccgctcactgagaggggctgcccgtctggtaggagagcctgtg
ctgggtgccaagatggagacagcagccaccctgctacgacgagacattgtctttgcagcc
agcctttatacccagtga
DBGET
integrated database retrieval system
