Dipodomys merriami (Merriam's kangaroo rat): 138828254
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Entry
138828254 CDS
T11079
Symbol
Ddx39b
Name
(RefSeq) spliceosome RNA helicase DDX39B isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
dmer Dipodomys merriami (Merriam's kangaroo rat)
Pathway
dmer03013
Nucleocytoplasmic transport
dmer03015
mRNA surveillance pathway
dmer03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dmer00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
138828254 (Ddx39b)
09122 Translation
03013 Nucleocytoplasmic transport
138828254 (Ddx39b)
03015 mRNA surveillance pathway
138828254 (Ddx39b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dmer03019
]
138828254 (Ddx39b)
03041 Spliceosome [BR:
dmer03041
]
138828254 (Ddx39b)
Enzymes [BR:
dmer01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
138828254 (Ddx39b)
Messenger RNA biogenesis [BR:
dmer03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
138828254 (Ddx39b)
Spliceosome [BR:
dmer03041
]
Complex C
Other components
EJC/TREX
138828254 (Ddx39b)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
138828254 (Ddx39b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
138828254
NCBI-ProteinID:
XP_069880279
LinkDB
All DBs
Position
Unknown
AA seq
476 aa
AA seq
DB search
MDFSTRLFDWKLVPSLFLSQALPPPLVFTFFWENFYRDLSHYPLAGIIMAENDVDNELLD
YEEDEVETAAGGDGAEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQ
HECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKE
YERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKH
FILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVD
DETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNF
PAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYL
HRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDISSYIEQTR
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
atggatttctcaacgcgtctcttcgattggaaactagtaccttctcttttcctttctcaa
gcccttccccctcccctggttttcacatttttctgggagaatttctacagagacctctcc
cattatccccttgctggcataataatggcagagaacgatgtggacaatgagctcttggac
tatgaagaggatgaggtggagaccgcagctgggggagatggggctgaagcccctgccaag
aaagatgtcaagggctcttatgtctccatccacagctctggctttcgagacttcttgctc
aagccagagttgctccgagccattgtcgactgtggctttgagcatccatctgaagttcag
catgagtgcatccctcaagccattctgggaatggatgtcctgtgccaggccaaatcaggc
atgggaaagacagcagtgtttgtgttggccacactgcaacagttggaaccagttactgga
caggtgtctgtgctggtgatgtgtcatactagggagttggcttttcagataagcaaggaa
tatgagcgcttctctaaatacatgcccaatgtcaaggttgcagtgttttttggtggtctg
tctatcaagaaggatgaagaggtgctgaagaagaactgcccgcatatcgtcgtggggact
cctggccgtatcttagccctggctcgaaataaaagcctcaacctcaaacacattaaacac
ttcatcttggatgagtgtgataagatgcttgaacagctcgacatgcgtcgggatgtccag
gaaatatttcgcatgaccccccatgagaagcaggtcatgatgttcagtgctaccttgagc
aaagagatccggccagtctgccgaaagttcatgcaagatccaatggagatcttcgtggat
gatgagacgaagttgacgctgcatggattgcagcagtactacgtgaaactgaaggacaac
gagaagaaccggaagctctttgaccttttagatgtccttgagttcaaccaggtggtaatc
tttgtgaagtctgtgcaacggtgcatcgccctggcccagcttctggtggagcagaatttc
ccagccattgccatccaccgtggcatgccccaggaagagaggctttctcggtatcagcag
tttaaggattttcaacggcgaattcttgtggccaccaacctgtttggtcgaggcatggac
attgagcgggtgaacatcgccttcaactatgacatgcctgaggattctgacacatacctg
catcgggtggcgagagcaggccggtttggcaccaagggcttagccatcacatttgtgtca
gatgagaatgatgccaagattctcaatgatgtgcaggaccgctttgaggtcaatattagt
gagctgcctgatgagatagacatctcctcctacattgaacagacacggtag
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