Dipodomys merriami (Merriam's kangaroo rat): 138829054
Help
Entry
138829054 CDS
T11079
Symbol
Ddx1
Name
(RefSeq) ATP-dependent RNA helicase DDX1
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
dmer Dipodomys merriami (Merriam's kangaroo rat)
Brite
KEGG Orthology (KO) [BR:
dmer00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dmer03041
]
138829054 (Ddx1)
03016 Transfer RNA biogenesis [BR:
dmer03016
]
138829054 (Ddx1)
Enzymes [BR:
dmer01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
138829054 (Ddx1)
Spliceosome [BR:
dmer03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
138829054 (Ddx1)
Transfer RNA biogenesis [BR:
dmer03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
138829054 (Ddx1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
SPRY
ResIII
CMS1
DUF5766
Paramyxo_PNT
Motif
Other DBs
NCBI-GeneID:
138829054
NCBI-ProteinID:
XP_069881120
LinkDB
All DBs
Position
Unknown
AA seq
740 aa
AA seq
DB search
MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV
IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWH
GCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFD
NYGEEFTMHDTIGCYLDIDKGQVKFSKNGKDLGLAFEVPAHMKNQALFPACVLKNAELKF
NFGEEEFKFPPKDGFVALSKAPDSYVVKSQHTGNAQVTQTKFLPNAPKALIVEPSRELAE
QTLNNVKQFKKYIDNPKLRELLIIGGVAARDQLSVLDNGVDIVVGTPGRLDDLVSTGKLN
LSQVRFLVLDEADGLLSQGYSDFINRMHSQIPQITSDGKRLQVIVCSATLHSFDVKKLSE
KIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKNDRLWERLGKNHIRTDDVHAKDNTRPGAN
SPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFMQQGGGPDKKGHQF
SCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYV
HRIGRVGRAERMGLAISLVATEKEKVWYHVCSNRGKGCYNTRLKEDGGCTIWYNEMQLLS
EIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGNYKGHVDILAPTVQELAALEK
EAQTSFLHLGYLPNQLFRTF
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atggcggccttctccgagatgggtgttatgcctgagattgctcaagcagtggaagaaatg
gactggcttcttccaactgatatccaggccgaatctatcccattaatcctaggaggaggt
gatgtgttgatggctgcagaaacaggaagtggaaaaactggtgctttcagtattccagtt
atccagatagtttatgaaactctgaaagaccaacaggaaggtaaaaaaggaaaaacaaca
attaaaactggagcttcagtgctcaacaaatggcagatgaacccatatgatagagggtct
gcttttgcaattgggtcggatggtctttgttgtcaaagcagagaagtaaaggaatggcat
gggtgcagagctaccaaaggattaatgaaagggaaacactactatgaagtgtcttgtcac
gaccaaggtttgtgcagagttgggtggtctaccatgcaggcctctttagacctaggtact
gacaaatttggatttggatttggtggtacaggaaagaaatcccataataaacagtttgat
aattacggagaggaatttactatgcatgataccattggatgttacctagatatagataaa
ggacaagtcaagttttccaaaaatggaaaagatcttggtctggcatttgaagtaccagca
cacatgaaaaatcaagctctctttcctgcctgtgttttgaagaatgctgaactaaaattt
aactttggggaagaagaatttaagtttccacctaaagatggctttgttgctctttccaag
gcaccagatagttatgttgtcaagtcacagcacacaggtaatgcacaagtgacacaaacc
aagtttcttcccaatgctccaaaagctctcattgttgaaccctcccgggaattagctgaa
caaactttgaataatgttaaacagtttaagaagtatattgataatcctaagttaagggag
cttctgataattggaggtgttgcagcacgggatcaactctctgttttagataatggggtg
gatattgttgtaggtactccaggaagactagatgatttggtgtcaactggaaaactgaac
ttatctcaagtcagattcctggtcctggatgaagctgatggacttctttctcaaggttat
tctgattttataaataggatgcacagtcagattcctcagattacctctgatggaaaaaga
cttcaggtgattgtttgctctgctacattgcattcttttgatgtaaagaagctgtcggag
aagataatgcattttcccacatgggttgatttaaaaggagaagattctgttcccgatact
gtgcaccatgttgttgtccctgtgaatcccaaaaatgacaggctctgggaaaggctgggg
aaaaaccacattaggactgatgatgtacatgcaaaagacaacacaagacctggtgctaac
agtccagagatgtggtcggaagctattaaaatcctgaagggagagtacgctgtccgagca
atcaaggaacacaagatggatcaagcaattatcttctgcagaaccaaaatagactgtgat
aatttggaacagtactttatgcaacaaggaggaggacctgataaaaaaggacatcagttc
tcgtgtgtttgtcttcatggtgacagaaagcctcatgagagaaagcaaaacctggagaga
tttaagaagggagatgtaagattcctgatttgcacagatgtagctgccagaggaattgat
atccatggtgttccttatgtcataaatgtcaccctgcctgatgaaaagcaaaactatgta
caccgaatcggcagagtaggaagagctgaaaggatgggtttggctatttccctggtggca
acagaaaaagaaaaggtttggtatcatgtgtgtagcaatcgtggaaaaggatgttacaac
acaagactcaaggaagacgggggctgtactatatggtataatgagatgcagctgctgtct
gagatagaagaacatctgaactgtaccatttctcaagttgagcctgatataaaggttcca
gtggatgagtttgatgggaaagttacctatggtcaaaaaagggctgctggtggtggaaac
tataaaggccatgtggatattttggcacctactgttcaagagttggccgcccttgaaaag
gaggcacagacatctttcctgcatcttggctaccttcccaaccagctgttcagaaccttc
tga
DBGET
integrated database retrieval system
