Dipodomys merriami (Merriam's kangaroo rat): 138830656
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Entry
138830656 CDS
T11079
Symbol
Lig3
Name
(RefSeq) DNA ligase 3 isoform X1
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
dmer Dipodomys merriami (Merriam's kangaroo rat)
Pathway
dmer03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
dmer00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
138830656 (Lig3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dmer03400
]
138830656 (Lig3)
Enzymes [BR:
dmer01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
138830656 (Lig3)
DNA repair and recombination proteins [BR:
dmer03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
138830656 (Lig3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
LIG3_BRCT
zf-PARP
DNA_ligase_A_C
BRCT_2
RNA_ligase
Synaptonemal_3
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
138830656
NCBI-ProteinID:
XP_069883294
LinkDB
All DBs
Position
Unknown
AA seq
1040 aa
AA seq
DB search
MKFWPLKNWKPSLSCLLSPTLLCSYMTLAFKIFAQNLRALGRKELCLLQKQYHWPEIRQF
SQWSETALLRGHSLFQRRKPVQSFQGGHLRPLATHLVFLPGSHVGLCSGPCEMAEQRFCV
DYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESGGDMKEWYHIKCMFEKLERARATTK
KIEDLTELEGWEELEDNEKEQITQHIADLSSKATGTPKKKAVVQAKLTSTGQVASPVKGA
AVTTSTNPRKFSGFSAKPNNSEQDLSNPTTKTSLSSSRCDPKHKDCLLREFRKLCAMVAD
NPSYNTKTQIIQDFLRKGSAGDGFHGDVYLTVKLLLPGVIKSVYNLNDKQIVKLFSRIFN
CNPDDMARDLEQGDVSETIRVFFEQSKSFPPASKSLLTIQEVDEFLLLLSRLTKEDEQQQ
ALQDIASRCTGNDLKCIIRLIKHDLKMNSGAKHVLDALDPNAYEAFKASRNLQDVVERVL
LNEQEVEKEPGQRRALSVQASLMTPVQPMLAEACKSIEYAMKKCPNGMFSEIKYDGERVQ
VHKDGDHFSYFSRSLKPVLPHKVAHFKDYIPLAFPGGHSMILDSEVLLIDNQTGKPLPFG
TLGVHKKAAFQDANVCLFVFDCIYFNDVSLMDRPLCERRKFLHDNMVEIPNRIMFSEMKR
VTKASDLADMINRVIREGLEGLVLKDVKGTYEPGKRHWLKVKKDYLNEGAMADTADLVVL
GAFYGQGSKGGMMSIFLMGCYDPSSQKWCTVTKCAGGHDDATLARLQKELDMVKISKDPS
KIPSWLKINKIYYPDFIVPDPKKAAVWEITGAEFSKAEAHTADGISIRFPRCTRIRDDKD
WKSATNLPQLKELYQLSKERADFTVVAGDEGSSTTGGSSGENEGTSGSAASRMTPKGSPK
KPSTSARKAEGKLNNPSSKNGNRPTTKPSPVKLGANPSLKFSPVKVGEKRKATDETPCQT
KVKVLLDIFTGVRLYLPPSTPDFSRLRRYFVAFDGDLVQEFDIASATHVLGSGDKNCKAH
VVSPEWIWACIRKRRLIAPC
NT seq
3123 nt
NT seq
+upstream
nt +downstream
nt
atgaagttctggcctttgaaaaactggaagcctagcttgtcctgtcttttgtctcctacg
cttttgtgcagctatatgactttggctttcaaaatcttcgcacaaaacctccgtgcactt
ggcaggaaagagctgtgtctgctccaaaagcagtatcactggcctgaaataagacaattc
agccagtggtcagaaactgctctgcttcgggggcactcccttttccagagaagaaagcct
gttcagtcattccaaggaggccatttgagaccacttgccacccaccttgttttcttgcca
ggctcgcatgtgggactctgtagtggcccctgtgagatggccgagcaacggttttgtgtg
gactacgccaagcgtggcaccgctggctgcaaaaaatgcaaggaaaagattgtcaagggc
gtgtgtcgaattggcaaagtggtacccaatcccttttctgagtctggcggtgatatgaaa
gagtggtaccacattaaatgcatgtttgagaaattggaacgggctcgggccaccacaaaa
aagatcgaggacctcacagagttggaaggctgggaagagctggaggacaacgaaaaggag
cagataacccaacacattgcagatctgtcttcaaaggcaacaggcacaccaaagaagaaa
gctgtggtccaggctaagttgacaagcactggccaagtggcatccccagtgaaaggcgct
gcagttaccaccagtaccaacccccggaaattctctggcttctcagctaagcccaacaac
tctgagcaagacctctcgaaccctactactaagacaagcctgtcttcaagcagatgtgac
cccaagcacaaagattgtctgttaagggagtttcggaagttgtgtgccatggtggctgac
aatcctagctacaacacaaagacccagatcatccaggacttcttgcggaaaggctcagca
ggagatggcttccacggggatgtgtacctaacagtgaagctgttgctgcctggtgtcatt
aagagtgtttacaacttgaatgataagcagattgtaaagcttttcagccgcatttttaac
tgcaacccagatgatatggcacgggacctagaacagggtgacgtgtcagagacgatcaga
gtcttctttgagcagagcaagtcttttcccccagcttccaagagccttctcaccatccag
gaagtggatgaattcctcctgctgctctccaggctcaccaaggaggatgagcagcagcag
gccctgcaggatattgcctccaggtgcacaggtaatgaccttaagtgcatcatcaggctg
atcaaacacgatctgaagatgaactcgggtgcaaaacatgtgttagatgctctggatccc
aatgcctatgaagccttcaaagcctcacgtaacctgcaagatgtggtagagcgggtcctg
ctcaatgagcaggaggtggaaaaggagccaggccagagacgggccctgagtgttcaggcc
tcactaatgacacctgtgcagcccatgctggctgaggcctgcaagtccatcgagtatgca
atgaagaaatgtcccaacggcatgttctctgagatcaagtatgacggggaacgagtccag
gtccataaggatggagaccacttcagctacttcagccgcagtctcaaacctgtcctgcct
cataaggtggcccacttcaaggactacatccccttggcttttcctgggggccacagcatg
atcttggactcagaggtgctcctgattgacaaccaaacaggcaaaccactaccctttggg
actctgggagtgcacaagaaagctgccttccaagatgctaatgtctgcctgtttgttttt
gactgtatctattttaatgatgtcagcttgatggacaggcctctctgtgagcggaggaag
tttcttcatgacaacatggttgaaattcctaaccggatcatgttctcagaaatgaagcga
gtcacaaaagcctctgacttggccgacatgatcaaccgggtgattcgagaggggctggaa
gggctagtgctgaaggatgtgaagggcacatatgaacctggaaagcggcattggctaaaa
gtgaagaaagactatttgaatgagggggcgatggccgacacagctgacctagtggttctt
ggggccttctatgggcaggggagcaaaggtggcatgatgtccatcttcctcatgggatgc
tatgaccctagcagccagaagtggtgtactgtcactaagtgtgcaggaggccatgatgat
gccacgcttgcccgcctgcagaaggagctagacatggtgaagatcagcaaggatccaagc
aaaatacccagctggctgaagatcaacaagatctactatcctgacttcattgttccagac
ccaaagaaagctgcagtgtgggagatcacaggggcagaattctccaaagccgaggctcac
acagcagatgggatctccatccgattccctcgctgcacccggatccgggatgacaaggac
tggaagtctgccactaacctcccccaactcaaggaactctatcagctgtccaaggagagg
gcagacttcactgtagtggctggagatgaggggagctccactacaggaggcagcagtggc
gagaatgagggcacctccgggtctgctgcatcccgcatgactcccaaaggctccccgaaa
aagccctctaccagtgccaggaaggctgaagggaaactgaataaccccagcagcaaaaat
ggcaacaggcccactacaaagccttcccctgtgaaattgggagcaaatccatccctaaag
ttttctccagtgaaagtaggggagaagaggaaagctactgatgagaccccatgccaaaca
aaggtgaaggtgctactggacatcttcactggggtgcggctctatttgccaccctccaca
ccagacttcagtcgtctccggcgctacttcgtggcattcgacggggacctggtacaggaa
tttgacatagcctccgccacacatgtgctgggtagtggggacaagaactgcaaagcccat
gtggtctccccagagtggatttgggcatgtatccggaaacggaggctgatagctccctgc
tag
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integrated database retrieval system
