Dipodomys merriami (Merriam's kangaroo rat): 138830806
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Entry
138830806 CDS
T11079
Symbol
Top3a
Name
(RefSeq) DNA topoisomerase 3-alpha isoform X1
KO
K03165
DNA topoisomerase III [EC:
5.6.2.1
]
Organism
dmer Dipodomys merriami (Merriam's kangaroo rat)
Pathway
dmer03440
Homologous recombination
dmer03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
dmer00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
138830806 (Top3a)
03460 Fanconi anemia pathway
138830806 (Top3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dmer03032
]
138830806 (Top3a)
03400 DNA repair and recombination proteins [BR:
dmer03400
]
138830806 (Top3a)
Enzymes [BR:
dmer01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
138830806 (Top3a)
DNA replication proteins [BR:
dmer03032
]
Eukaryotic type
DNA Topoisomerases
138830806 (Top3a)
DNA repair and recombination proteins [BR:
dmer03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Bloom's syndrome complex (BTR)
138830806 (Top3a)
FA (Fanconi anemia) pathway
138830806 (Top3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_GRF
Toprim
Zn_ribbon_Top1
Zn_ribbon_GRF_2
zf-C2H2_10
Motif
Other DBs
NCBI-GeneID:
138830806
NCBI-ProteinID:
XP_069883675
LinkDB
All DBs
Position
Unknown
AA seq
1004 aa
AA seq
DB search
MIFPVSRFALPWLQRSGSRVLSRAAMEVALRGVRKVLCVAEKNDAAKGIADLLSNGRMRR
REGLSKFNKIYEFDYHLCGQSVTMVMTSVSGHLLAHDFQMQFRKWQSCNPLVLFEAEIEK
YCPDNFVDIKKTLEREIRQCQALVIWTDCDREGENIGFEIIHVCKAVKPSLQVLRARFSE
ITPRAVRMACENLTEPDQRVSDAVDVRQELDLRIGAAFTRFQTLRLQKIFPEVLAEQLIS
YGSCQFPTLGFVVERFKAIQTFVPEIFHKIKVTHDHRDGTVEFNWKRHRLFNHTACLVLY
QLCMEDPRATVVEVKSKPKSKWRPQALDTVELEKLASRKLRINAKETMRIAEKLYTQGYI
SYPRTETNIFPKDLNLMALVEQQTSDPHWGAFAQSILERGGPNPRNGNKSDQAHPPIHPT
KYTSNLQGDERRLYEFIVRHFLACCSQDAQGQETTVEIDIAQERFVAHGLIILARNYLDV
YPYDHWSDKLLPLYEQGSCFQPSTVEMVDGETSPPQLLTEADLIALMEKHGIGTDATHAE
HIETIKARMYVGLTSDKRFLPGHLGMGLVEGYDSMGYEMSKPDLRAELEADLKLICEGKK
DKFVVLRQQVQKYKQVFIEAVAKATKLDEALSQYFGERAEVAQQEDIYPAMPEPIRKCPQ
CNKDMVLKTKKTGGFYLSCTGFPECRSAIWFPDSVLEASRDDSVCSVCQPPPVYRLKLKF
KRGSLPPTMPLEFVGCIGGCDETLKEILDLRFSRGAAPRANQASGLLQASQALNRMDSSQ
QSHSQLHSSRQTGPSMPLHQTLQPPTGTGESNSVTCNCGQEAVLLTVRKEGPNQGRQFYK
CSGGGCNFFLWADSSHQSGGGLPTPASRPPGSSMGRLPGPGNQSGGFGNPSDVSGGSTCC
LCSQPAVTRTVQKDGPNKGRQFHTCAKPREQQCGFFQWADENVAPGTFAALPWPGGRGKT
QGPEARSKRARANSSDVGSTTKKPRKCSLCHQPGHTRPFCPQNR
NT seq
3015 nt
NT seq
+upstream
nt +downstream
nt
atgattttcccggtctcccgcttcgcgctcccctggctgcagcggtctggaagccgtgtc
ttgtcccgcgccgccatggaagtggctctccgaggcgttcggaaagtcctctgtgtggct
gagaagaacgacgcggccaagggcattgccgacctgctgtccaacggtcgtatgaggcgg
agagaaggactttctaaattcaataagatctatgaatttgattatcatctgtgtggccag
agtgttaccatggtaatgacctcggtttctggacatttgctggctcatgatttccagatg
cagtttcgaaaatggcagagctgcaacccacttgtcctctttgaagcagaaattgaaaag
tactgcccagacaattttgtagacatcaagaaaactctagaacgagagatacggcagtgc
caggccctggtgatctggactgactgtgacagagaaggtgaaaacattgggtttgagatt
atccacgtgtgcaaggctgtgaagcccagtctgcaggtgttgagagcccgtttctctgag
attacaccccgtgctgtgaggatggcctgtgaaaacctcactgagcctgatcagagagtg
agtgatgctgtggatgtgaggcaagagctagatctgaggattggagcggccttcactagg
ttccagaccctacggcttcagaagatttttcctgaggtgctagcagagcagcttatcagc
tatggcagctgccagttcccaacactgggattcgtggtggagaggttcaaagccattcag
acttttgtaccagaaatctttcacaaaatcaaagtaactcatgatcacagagatggtact
gtagaattcaactggaaaaggcatcgtctctttaaccacacagcttgtcttgtcctctat
cagttatgtatggaggatcccagggcaactgtggtagaggtaaagtctaagccaaagagc
aagtggaggcctcaagctttggatactgtggagctggagaagctggcttctcgcaagttg
agaataaatgctaaagaaaccatgcggattgctgaaaagctctatactcaagggtacatc
agctatccccgaacagaaacaaacatttttcccaaagacttaaacctgatggcattggta
gaacagcagacttctgatccacactggggggcctttgcccaaagcattctggagcggggt
ggccccaacccacgcaatgggaacaaatctgaccaagctcatcctcctattcaccccacc
aaatacaccagcaacttacagggagatgaaagaagactgtatgagttcattgttcgccat
tttctggcttgctgctcccaggatgctcaaggacaggaaaccactgtggagattgacatt
gctcaggaacgctttgtggcccatggcctcataatcctggcccgaaactacctggatgta
tatccatatgatcattggagtgacaagctccttcctctctatgagcaaggctcctgcttt
cagcccagtactgtggagatggtggatggagagacaagcccgccccagctgcttaccgaa
gctgacctcattgccctcatggagaagcatggcatcggtaccgatgccactcatgcagag
cacattgaaaccatcaaagcccggatgtatgtggggctcacttcagacaagcgattcctc
cctggtcacctgggcatgggacttgtggaaggttatgattccatgggctatgagatgtct
aaacctgacctccgggctgagctggaagctgatctgaagttgatctgtgagggcaagaag
gacaaatttgtggttctaaggcagcaagtgcagaaatataagcaggttttcattgaagca
gtggctaaggcaacgaaattggacgaggctttgtcccaatactttggggaaagggcagag
gtggcccaacaagaggatatctacccagccatgccagagcccatccggaagtgcccacag
tgcaacaaggacatggtcctcaagaccaagaaaactggcgggttctacctcagctgcaca
ggtttccctgagtgtcgatcagctatttggtttcctgactcagtgctagaggccagcagg
gatgatagcgtgtgttcggtttgtcagccaccccctgtatacaggttgaagttaaaattt
aagcgtggcagccttccaccaaccatgcctctagaatttgtgggttgcattggtggatgt
gatgagaccctgaaggaaatcttggacctgagattttcacggggggctgcccccagagca
aaccaggcctctggcctccttcaggccagccaggccctgaacaggatggacagtagccaa
caaagccactcccagctccatagcagccgacagactggaccctcgatgcctctgcaccag
accctccaaccaccaactggcactggtgaaagcaactctgtgacatgcaactgtggccag
gaggctgtgctgctcactgtccgcaaggagggccctaaccagggtcggcagttttacaag
tgcagtggtggtggctgcaacttttttctgtgggctgacagcagccatcagtcaggagga
ggactccccacccctgcctcaagacctccaggaagctccatgggacgcctaccaggccca
ggcaatcagtctggtggttttggtaaccctagtgatgtaagtggtggcagcacatgctgc
ctgtgcagccagcctgccgtgacacggactgtgcagaaggacggacccaacaaagggcgc
cagttccatacgtgtgccaagccacgagagcaacaatgtggcttctttcagtgggctgac
gagaatgtggcaccagggacttttgcagctctaccctggccaggaggcagaggaaaaact
caggggccagaggccagaagcaaaagagccagagccaattcctcagatgtgggatccaca
acaaagaagccccggaaatgcagcctttgccaccagcctggacataccagacctttctgt
cctcagaacagatga
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integrated database retrieval system
