Dipodomys merriami (Merriam's kangaroo rat): 138830873
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Entry
138830873 CDS
T11079
Symbol
Ddx42
Name
(RefSeq) ATP-dependent RNA helicase DDX42
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
dmer
Dipodomys merriami (Merriam's kangaroo rat)
Pathway
dmer03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dmer00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
138830873 (Ddx42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dmer03041
]
138830873 (Ddx42)
Enzymes [BR:
dmer01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
138830873 (Ddx42)
Spliceosome [BR:
dmer03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
138830873 (Ddx42)
Complex B
138830873 (Ddx42)
Complex C
U2 SnRNP specific factors
138830873 (Ddx42)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
P-loop_SecA
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
138830873
NCBI-ProteinID:
XP_069883848
LinkDB
All DBs
Position
Unknown
AA seq
929 aa
AA seq
DB search
MNWNKGGPGTKRGFGFGGFAISAGKKEEPKLPQQSHSAFGATSSSSGFGKSAPPQLPSFY
KIGSKRANFDEENAYFEDEEEDSSNVDLPYIPAENSPTRQQFHSKPADSDSDDDPLEAFM
AEVEDQAARDMKRLEDKDKERKNVKGIRDDIEEEDDQEAYFRYMAENPTAGVVQEEEEDN
LEYDSDGNPIAPSKKIIDPLPPIDHSEIDYPPFEKNFYNEHEEITNLTPQQLIDLRHKLN
LRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTG
SGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAV
YGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQ
VRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHS
GPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKV
ISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYT
LLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNAWFRKSRFKGGKGKKLNIGGGGLGY
RERPGLGSENTDRGNNVMSNYEAYKPSTGAMGDRLTAMKAAFQSQYKSHFVAASLSNQKA
GSSAAGASGWTSAGSLNSVPTNSAQQGPNSPDSPVTGVTKSMPGFSNTGNISSAPVTYPS
IGAQGVNNTASGNNSREGIGGGNGKRERYTENRAGGRHSHGESGNRHGDSPRHGDGGRHG
DGYRYTESSRHTDSHRHGENRHGGNAGRHGEGRGANDGRNGESRKEGCNRESKVDPKMDN
SKIDSKTDKTADGFAVPEPPKRKKSRWDS
NT seq
2790 nt
NT seq
+upstream
nt +downstream
nt
atgaactggaataaaggtggtccaggcactaaacgggggtttggttttggaggttttgct
atcagtgctggcaagaaagaggaacccaaactcccacaacagtcccacagtgcctttggg
gcaactagctcttcttctggatttggaaagtcagctccaccacagcttccttctttctac
aaaattggatctaagcgggccaactttgatgaagaaaatgcgtactttgaagatgaggaa
gaagactccagtaatgttgatttaccttacattcctgctgaaaactcacctacacgccag
cagttccattccaagccagcagattctgacagcgatgatgatcccttggaagcattcatg
gctgaagtggaggatcaggcagctagagatatgaagaggttggaagacaaggacaaggaa
aggaaaaatgtcaagggtattcgagatgacattgaagaggaagatgaccaagaagcttac
tttcggtacatggcagaaaacccaactgctggtgtggttcaagaagaggaagaagacaat
ctggaatatgatagtgatggaaatccaattgcaccttccaaaaaaattatcgatcctctt
cctcccattgatcattcagagattgactacccaccatttgaaaaaaatttttacaatgaa
catgaggagataaccaacctcactccacagcagctaatagatcttcggcacaagctcaac
ctacgggtctctggcgctgcaccacctagaccaggaagtagttttgctcattttggtttt
gatgaacaacttatgcaccaaattcggaagtctgagtacacacagcccactccaatacag
tgccagggtgtgcctgtggcattaagtggtagagacatgattggtatcgccaaaacaggc
agtggaaaaactgcagcctttatctggcccatgttgattcacataatggatcagaaggaa
ttggaaccaggtgatgggccaattgcagttattgtttgccctactagggagctttgccag
cagatccatgcagaatgcaagaggtttgggaaggcatataatcttcgctcagtggcagta
tatggaggagggagcatgtgggaacaggccaaggcccttcaggaaggggcagagattgtt
gtatgtaccccgggtcgactaattgatcatgtgaagaagaaagctaccaatcttcaaaga
gtgtcttaccttgtgtttgatgaagcagatcgaatgtttgacatgggattcgaataccag
gttcggtccatagcaagtcatgttcgtccggacagacagactctcttattcagtgcaact
tttcggaagaagatcgaaaaattggccagagacatcttgattgaccctattcgagtagta
caaggagatattggagaggcaaacgaagatgtgacacagattgtagagatactccattct
gggcctagtaaatggaactggcttacccggcgtctggtggagtttacttcctctgggagt
gttctcctgtttgttactaaaaaagccaatgctgaagagctagccaataaccttaagcag
gagggtcataatcttggactgctccatggagacatggatcaaagtgagagaaacaaggtc
atttctgattttaagaagaaagacatcccagtcctagtggccacagatgttgcagcccgt
ggtctggacattccttcaattaaaactgtcattaattatgatgtggcacgagacattgat
acccatactcatagaattggccgcactggaagagcaggtgagaagggcgtggcctatacc
ttactgacccccaaggacagcaattttgctggtgacctcgtccggaacttggaaggggcc
aatcaacatgtttccaaggagctcctagatctggcaatgcagaatgcctggtttcggaag
tcacgattcaaaggagggaaaggcaaaaagctgaacattggtggaggaggcttgggctat
agggaacggcctggcctgggctctgagaatacagaccgaggaaataatgtaatgagcaat
tatgaggcgtataagccctccacaggagccatgggagatcggctaacagcaatgaaagca
gcttttcagtcgcagtacaagagtcactttgttgcagccagcttaagtaatcagaaggct
ggaagctctgctgctggggcaagtggatggactagtgcaggaagcttgaattctgttcca
actaattcagcacaacagggtcccaacagtcctgacagccctgtcactggtgtcacaaaa
agcatgccaggctttagcaatactgggaacatcagcagtgcaccagtgacctacccttcc
atcggagcccaaggagttaacaacacagcttcagggaataatagtcgagaagggattggg
ggtggcaatgggaaaagagagaggtatacagagaaccgggctggtggccgtcatagccat
ggagagagtggcaatcggcatggtgatagcccccgtcatggagatggtggtcgccacgga
gatggataccgttacacagaaagcagccggcacactgacagccatcggcatggagagaac
aggcacggaggaaatgcaggccggcatggtgagggccggggagcaaatgatggccgaaat
ggagaaagcaggaaagaaggttgtaatcgtgaaagcaaggtggaccccaagatggacaac
agcaagatagacagtaagacagataagacagctgatggtttcgctgtcccagaaccaccc
aaacgcaagaaaagtcgatgggacagttag
DBGET
integrated database retrieval system
