Dipodomys merriami (Merriam's kangaroo rat): 138832866
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Entry
138832866 CDS
T11079
Symbol
Chd1
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 1 isoform X1
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
dmer Dipodomys merriami (Merriam's kangaroo rat)
Brite
KEGG Orthology (KO) [BR:
dmer00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dmer03021
]
138832866 (Chd1)
03036 Chromosome and associated proteins [BR:
dmer03036
]
138832866 (Chd1)
Transcription machinery [BR:
dmer03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
138832866 (Chd1)
Chromosome and associated proteins [BR:
dmer03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
138832866 (Chd1)
SLIK complex
138832866 (Chd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_Hrp3
CDH1_2_SANT_HL1
CHD1-like_C
Chromo
Helicase_C
ResIII
DEAD
Motif
Other DBs
NCBI-GeneID:
138832866
NCBI-ProteinID:
XP_069887119
LinkDB
All DBs
Position
Unknown
AA seq
1808 aa
AA seq
DB search
MNGQSDEESVRNSSGESRAKKPKYQWKRRDRSQSDDDSGSASGSGSGSSSGSSSDGSSSQ
SGSSDSDSGSDSGSQSESESDTSRENKVQAKPPKVDGAEFWKSSPSILAVQRSAMLKKQQ
QQQQQQQHPASSNSGSEEDSSSSEESDDSSSAVKRKKHKDEDWQMSGSGSPSQSGSDSES
EEERDKSSCDETESDYEPKNKVKSRKPPSRSKSKNGKKLLGQKKRQIDSSEDDDDEEDYD
NDKRSSRRQATVNVSYKEDEEMKTDSDDLLEVCGEDVPQPEEEEFETIERFMDCRIGRKG
ATGATTTIYAVEADGDPNAGFDKNKEPGDIQYLIKWKGWSHIHNTWETEETLKQQNVRGM
KKLDNYKKKDQETIRWLKNASPEDVEYYNCQQELTDDLHKQYQIVERIIAHSNQKSAAGY
PDYYCKWQGLPYSECSWEDGALISKKFQACIDEYFSRNQSKTTPFKDCKVLKQRPRFVAL
KKQPCYIGGHEGLELRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHE
HQLYGPFLLVVPLSTLTSWQREIQTWASQMNAVVYLGDINSRNMIRTHEWMHPQTKRLKF
NILLTTYEILLKDKAFLGGLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPL
QNSLKELWSLLHFIMPEKFSSWEDFEEEHGKGREYGYASLHKELEPFLLRRVKKDVEKSL
PAKVEQILRMEMSALQKQYYKWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLIK
PPDNNEFYNKQEALQHLIRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKY
RQFPFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDW
NPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRMDTTGKT
VLHTGSAPSSSTPFNKEELSAILKFGAEELFKEPEGEEQEPQEMDIDEILKRAETHENEP
GPLTVGDELLSQFKVANFSNMDEDDIELEPERNSKNWDEIIPEDQRRRLEEEERQKELEE
IYMLPRMRNCAKQISFNGSEGRRSRSRRYSGSDSDSISERKRPKKRGRPRTIPRENIKGF
SDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGCIKALKDSSSG
TERTGGRLGKVKGPTFRISGVQVNAKLVISHEEELIPLHKSIPSDPEERKQYTIQCHTKA
AHFDIDWGKEDDSNLLIGIYEYGYGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRA
DYLIKLLSKDLAKKEAMRLSGAGGSKRKKARAKKNKVMKSIKVKEEIKSDSSPLPSEKSD
EDDDKNKVASVKHPNKRMKTERDGEEPLEPDLCIKKEPGEKREAKENKREIERELKDKDL
KEKDCKEKRENKVKEAMKKRKNIKEEKLSESKSENKERSKKSSMSDAPVHITASGEPVPI
SEESEVLDQKTFSICKERMRPVKAALKQLDRPEKGLSEREQLEHTRQCLIKIGDHITECL
KEYTNPEQIKQWRKNLWIFVSKFTEFDARKLHKLYKHAIKKRQESQQSNDQNSNLNAHVI
RNPDVERLKDNTNHDDSSRDSYSSDRHLSQYHDHHKDRHQGDSYKKTDSRKRPYSSFSNG
KDHREWDHYKQDSRYYSEREKHRKLDDHRSRDHRSTLEGSLKDRSHSDHRSHSDHRLHSD
HRSSSEYTHHKSSRDYRYHSDWQMDHRASSSGPRSPLDQRSPYGSRSPFEHSVEHKSTPE
HTWSSRKT
NT seq
5427 nt
NT seq
+upstream
nt +downstream
nt
atgaatggacagagtgatgaagaaagtgtgagaaacagtagtggagaatcaagggcaaag
aaaccgaaataccagtggaagaggagagatagaagccagtcggatgatgattctgggtca
gcttcaggctcgggatcaggttcaagttctggaagcagtagtgatggaagcagtagccag
tcaggtagcagtgactctgactctggatctgactcaggcagtcagtcagaatctgagtca
gatacatcccgagaaaacaaagttcaagccaaaccaccgaaagttgatggagcagagttt
tggaaatctagccctagtattttggctgttcagagatctgcaatgctcaagaagcagcag
cagcagcagcaacagcagcaacatccagcttcatctaatagtggatcagaagaggattcc
tctagtagtgaagagtctgatgattcatcaagtgccgtcaaaaggaaaaaacataaagat
gaagattggcagatgtctgggtcaggatctccatctcagtctggttcagattcagaatct
gaagaagaaagagataaaagtagttgtgatgaaacagaatctgattatgagccaaaaaac
aaagtcaaaagcagaaaacctccaagtagatctaagtcaaaaaatggaaaaaagcttctt
ggacaaaaaaagagacagattgattcatctgaagatgatgatgatgaggaagattatgat
aatgacaaaagaagttctcgtcgacaagccactgtcaatgttagctacaaggaagatgaa
gaaatgaaaacagattctgatgacctactggaagtctgtggagaggatgttcctcaaccc
gaggaagaggaatttgaaacaatagaaaggtttatggattgtcgtattgggagaaaagga
gctactggtgctactacaaccatatatgcagttgaagcagatggtgaccccaatgcagga
tttgacaaaaacaaggaaccaggagacatccagtatttaattaaatggaaaggatggtcc
catattcacaacacttgggagacagaagaaactcttaagcaacaaaatgttagaggaatg
aaaaaattggataattataagaaaaaagatcaggaaacaatacgatggttgaaaaatgct
tcaccagaagatgtggaatactataattgccagcaagaacttacagatgatctacataaa
cagtatcaaatagtggagcgtataattgctcattccaatcaaaagtcagcagctggttat
cctgattattattgcaaatggcagggccttccgtattcagagtgcagctgggaagatgga
gctctcatttcaaaaaagtttcaagcatgtattgatgagtattttagcagaaaccaatca
aaaaccactccttttaaagattgtaaagtattaaaacaaagaccaagatttgttgcactg
aagaagcagccatgctatattggaggacatgaaggtttagaattaagagattatcagctg
aatggtttaaattggcttgctcactcttggtgcaaaggaaatagttgtatacttgctgat
gaaatgggccttggaaaaacaatacagacgatctcatttttgaactacttgtttcatgaa
catcagttgtatggaccttttctactagttgttccactttctactttaacttcctggcaa
agggagattcagacgtgggcttctcaaatgaatgctgttgtttatttaggtgacattaat
agcagaaacatgataagaactcatgaatggatgcatccccagaccaaacggttaaaattt
aatatacttttaacaacttacgagattttactgaaggataaggcattccttggtggtcta
aattgggcatttataggtgttgatgaagcacatcgattaaaaaatgatgattcccttctg
tataaaactttaatagattttaaatctaatcatcgcctccttatcactggaacaccgcta
caaaactccctcaaagagctgtggtcattgctacatttcattatgccagaaaagttttct
tcttgggaagattttgaagaagaacatggaaaagggagagaatatggttatgcaagcctc
cacaaggagctggagccatttttattacgtcgcgttaagaaagatgtagaaaaatctctt
cctgccaaggttgagcagattttaagaatggaaatgagtgctttacagaaacaatactac
aaatggattttaactaggaattacaaagccctcagcaaaggttctaagggcagtacctca
ggctttttgaacattatgatggagctaaagaaatgttgtaaccattgctacctcattaag
cctccggataataatgaattctataataaacaagaagccttacaacacttaatccgtagt
agtggaaaattgatccttcttgataaattgttaattcgtctaagagaacggggcaatcga
gtattaattttttctcaaatggtgcggatgttggatatacttgcagaatatttaaaatat
cgtcagtttccttttcaaagattagatgggtcaataaaaggagaactgaggaaacaagct
ctagatcatttcaatgctgagggatcagaggatttctgctttttgctttctacaagagct
ggaggtttagggattaatttagcctctgctgacactgttgttatatttgattccgactgg
aatccacaaaatgatcttcaggcacaggcaagagctcaccgaattgggcaaaaaaaacag
gtgaatatataccgtctagtaacaaagggatcagttgaagaagatattcttgaaagggcc
aaaaagaagatggttttagatcatcttgtgattcaaagaatggacacaaccgggaagaca
gtactacacacaggttctgctccttcgagttctactcctttcaataaagaagaattatca
gccattttgaagtttggtgctgaggaactttttaaggaacctgaaggagaagaacaagag
ccccaggaaatggatatagatgaaatcttgaagagggctgaaacacatgagaacgaacca
ggccctttaactgtaggagatgagttactttcccagtttaaggttgccaatttttcaaac
atggatgaagatgacattgaattagaacctgaaaggaattcaaagaactgggatgaaatc
attccagaagatcaaagaagacgattagaagaggaagaaaggcaaaaggaacttgaggaa
atctatatgcttccacgaatgagaaattgtgcaaaacagattagtttcaatggaagtgaa
gggaggcgcagtagaagtagaaggtactctggatctgatagtgattcaatctcagaaagg
aaaaggccaaagaaacgaggaagaccacgcactatccctcgtgaaaatattaaaggattt
agtgatgcagaaattaggcggtttatcaagagttataagaaatttggtggccctctggaa
agattagatgcaattgctcgagatgctgagctagttgataagtcagaaacagaccttaga
cgactaggagaattggtacacaatggttgcattaaagctttaaaggatagttcttcagga
acagaacgaacaggtggtagacttggaaaagtgaagggtccaacattccgaatatcagga
gtacaagtgaatgctaagctagtcatctcccatgaagaagaattaatacctttgcacaaa
tctattccttctgatccagaagaaagaaagcagtatacaatccaatgtcacacaaaagct
gctcattttgatatagactggggcaaggaagacgattccaatttattaattggtatttat
gagtatggctatggaagttgggaaatgattaaaatggatccagatctcagtctaacacac
aagattcttccagatgatcctgataaaaaaccacaagcaaaacagttgcagacacgtgca
gactacctcatcaaattacttagtaaagaccttgcaaaaaaagaagctatgagactttct
ggtgcaggaggttccaagaggaaaaaagcaagagctaagaagaataaagtgatgaagtcc
ataaaagtaaaagaggaaataaagagtgattcttctcccctgccttcagagaagtctgat
gaagatgatgataaaaataaggttgcttctgtgaaacatccaaataaaagaatgaaaaca
gaaagagatggtgaagaaccacttgagccagatctttgtataaagaaggaaccaggagaa
aagagggaagcaaaagagaataaaagagaaattgaaagggagctaaaagataaagattta
aaggaaaaagattgtaaagaaaaaagagaaaacaaagtaaaagaagctatgaagaagaga
aaaaacataaaagaagaaaaattgagtgaatccaaatctgaaaataaggagcgatccaaa
aagtcttcaatgtcagatgcaccagttcatatcactgcaagtggtgaaccagttcccata
tcagaagaatctgaagtccttgatcagaagacatttagcatttgtaaagaaagaatgagg
cctgtaaaagcagctttgaaacaacttgatagacccgaaaaaggcctctcagaaagagaa
cagctggaacataccagacaatgtttaataaaaattggagaccatatcacagaatgtctg
aaagaatatacaaatcctgaacaaattaagcagtggagaaaaaacctgtggatttttgta
tctaagtttactgaatttgatgcaagaaaattacataaattatataagcatgctattaaa
aagcggcaagaatctcagcaaagcaatgaccagaacagcaacttgaatgctcatgtgatt
agaaatccagatgtagaaaggttaaaagataatacaaatcatgatgacagcagcagggac
agttattcttctgatagacacttatctcagtaccatgatcatcacaaagaccggcaccaa
ggagattcttataaaaagactgattctaggaaaagaccctattcttcatttagtaatggt
aaagatcatcgtgaatgggatcactacaagcaagacagcaggtactacagtgagagagaa
aaacacagaaagctggatgatcacaggagtagagatcacaggtcaactttggaaggaagt
ttaaaggatagatctcattctgaccatcgatctcattcagatcatcggttacattcagat
caccggtcaagttctgaatacacgcatcataaatcttccagggattatagatatcactca
gattggcaaatggaccacagagcttccagtagtggccccaggtcaccactagatcagcgg
tctccttatggctccagatctccgtttgaacattcagttgaacacaaaagtacacccgag
catacctggagcagtaggaaaacataa
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integrated database retrieval system
