Dipodomys merriami (Merriam's kangaroo rat): 138833827
Help
Entry
138833827 CDS
T11079
Symbol
Hif1a
Name
(RefSeq) hypoxia-inducible factor 1-alpha isoform X1
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
dmer Dipodomys merriami (Merriam's kangaroo rat)
Pathway
dmer04066
HIF-1 signaling pathway
dmer04137
Mitophagy - animal
dmer04140
Autophagy - animal
dmer04148
Efferocytosis
dmer04659
Th17 cell differentiation
dmer04919
Thyroid hormone signaling pathway
dmer05167
Kaposi sarcoma-associated herpesvirus infection
dmer05200
Pathways in cancer
dmer05205
Proteoglycans in cancer
dmer05208
Chemical carcinogenesis - reactive oxygen species
dmer05211
Renal cell carcinoma
dmer05230
Central carbon metabolism in cancer
dmer05231
Choline metabolism in cancer
dmer05235
PD-L1 expression and PD-1 checkpoint pathway in cancer
Brite
KEGG Orthology (KO) [BR:
dmer00001
]
09130 Environmental Information Processing
09132 Signal transduction
04066 HIF-1 signaling pathway
138833827 (Hif1a)
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
138833827 (Hif1a)
04137 Mitophagy - animal
138833827 (Hif1a)
04148 Efferocytosis
138833827 (Hif1a)
09150 Organismal Systems
09151 Immune system
04659 Th17 cell differentiation
138833827 (Hif1a)
09152 Endocrine system
04919 Thyroid hormone signaling pathway
138833827 (Hif1a)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
138833827 (Hif1a)
05205 Proteoglycans in cancer
138833827 (Hif1a)
05208 Chemical carcinogenesis - reactive oxygen species
138833827 (Hif1a)
05230 Central carbon metabolism in cancer
138833827 (Hif1a)
05231 Choline metabolism in cancer
138833827 (Hif1a)
05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
138833827 (Hif1a)
09162 Cancer: specific types
05211 Renal cell carcinoma
138833827 (Hif1a)
09172 Infectious disease: viral
05167 Kaposi sarcoma-associated herpesvirus infection
138833827 (Hif1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
dmer03000
]
138833827 (Hif1a)
Transcription factors [BR:
dmer03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
138833827 (Hif1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
bHLH_HIF1A
PAS_3
PAS_11
HIF-1a_CTAD
PAS
HIF-1
PAS_9
PAS_4
HLH
DDRGK
Motif
Other DBs
NCBI-GeneID:
138833827
NCBI-ProteinID:
XP_069888281
LinkDB
All DBs
Position
Unknown
AA seq
822 aa
AA seq
DB search
MEGAGGANDKKNRISSERRKEKSRDAARSRRSKESEVFYELAHQLPLPHNVSSHLDKASV
MRLTISYLRVRKLLDAGDLDIEDEMKAQMNCFYLKALDGFVMVLTDDGDMIYISDNVNKY
MGLTQFELTGHSVFDFTHPCDHEEMREMLTHRNGPVKKGKEQNTQRSFFLRMKCTLTSRG
RTMNIKSATWKVLHCTGHIHVYDTNSNQPQCGYKKPPMTCLVLICEPIPHPSNIEIPLDS
KTFLSRHSLDMKFSYCDERITELMGYEPEELLGRSIYEYYHALDSDHLTKTHHDMFTKGQ
VTTGQYRMLAKRGGYVWVETQATVIYNTKNSQPQCIVCVNYVVSGIIQHDLIFSLQQTEC
ILKPVESSDMKMTQLFIKVEPEDTGSLFDKLKKEPDALTLLAPAAGDTIISLDFGSNDTE
TEDQQLEEVPLYNDVMFPSSNEKLSTINLAMSPLPASESPKALRSNADPALNEEVALKLE
PNTESLELSFTMPQIQDQPASPTDGSSRQSSPEPNSPSEYCFDVDSVFKLELVEKLFAED
TEAKNPFSSQDTDLDLEMLAPYIPMDDDFQLRSFDQLSPLENNSSMNTVTVFQPTPLQEP
AINTTTATATATATDELKTVTKDGMEDVKILLVSPSPTHVPKETTSDTTSSSSSYSGTQS
RTVSPNIAGNGVIEQTEKSHPRSPNVVSVILSQRNTVPEEELNPKIIALQNAQRKRKMEH
DGSLFQAVGIGTLLQQADDQTTTTSLSWKRVKGCKSSEPNGVEQKTIILIPSDLACRLLG
QSMDESGLPQLTSYDCEVNAPIQGSRNLLQGEDLLRALDQVN
NT seq
2469 nt
NT seq
+upstream
nt +downstream
nt
atggagggcgccggcggcgcgaacgacaagaagaataggataagttctgaacgccgaaaa
gagaagtccagagatgcagccagatctcggcgaagcaaagagtcagaagtattttacgag
cttgctcatcagctgccacttccccataacgtgagctcacatctggataaggcttctgtt
atgaggcttaccatcagctacttgcgtgtgagaaaacttcttgatgctggtgatctggac
attgaagatgagatgaaggcccagatgaactgcttttatctgaaagccctggatggcttt
gttatggtgctaacagatgatggcgacatgatttacatttctgataatgtaaacaaatac
atggggttgactcagtttgaactaactggacacagtgtgtttgattttactcatccatgt
gaccatgaggaaatgagagaaatgctcacacacagaaatggccctgtgaaaaagggtaaa
gaacaaaatacacaacgaagcttttttctcagaatgaagtgtaccctaactagccgaggg
agaactatgaacataaagtctgcaacatggaaggtacttcactgcacaggccacattcat
gtgtatgataccaacagtaaccagcctcagtgtggatataagaaaccacccatgacctgc
ttggtgctgatttgtgaacccattcctcatccatcaaacattgaaattcctttagatagt
aagacttttcttagtcgacacagcctggatatgaagttttcttattgtgatgaaagaatt
actgaattgatgggatatgagccagaagaacttttgggtcgctcaatttatgagtattat
catgcattggactctgatcatctgaccaaaactcaccatgatatgtttactaaaggacaa
gtcaccacaggacagtacaggatgcttgccaaaagaggtggctatgtctgggttgaaact
caagcaactgttatctataataccaagaactctcaaccacaatgtattgtgtgtgtgaat
tatgttgtgagtggtattattcagcacgacttgattttctcccttcaacaaacagaatgt
atcctcaaaccagttgaatcttcagatatgaaaatgactcagctgttcatcaaagttgag
ccagaggatacaggcagcctctttgataaacttaaaaaggagccagatgctttaactctg
ctggccccagctgctggagacacaatcatatctctagattttggaagcaatgacacagaa
actgaagaccaacaacttgaggaagttccattatacaatgatgtaatgttcccctcatct
aatgaaaaactgtcaactataaacttggcgatgtctccattacctgcctctgaaagtcca
aaggcacttcgaagtaatgctgaccctgctctcaatgaagaagttgcattaaaattagaa
ccaaatacagagtcactggaactttcttttaccatgccccagattcaggatcagccagca
agtcctactgatggaagcagtagacaaagttcacctgagccaaacagtcccagtgagtat
tgttttgatgtggacagtgtattcaagttggaattggtagagaaactttttgctgaagac
acagaggcaaagaatccattttcgagtcaggacactgatttggacttggagatgctggcc
ccctacatcccaatggatgacgacttccagttacgttcctttgatcagctgtcaccatta
gaaaacaattctagtatgaacacagttacagtcttccagccgactccactgcaagaacct
gccattaacaccaccactgccactgcaactgccactgccactgatgaattaaaaacagtg
acaaaagatggtatggaagacgttaaaatattgcttgtatctccatctcctacccacgta
cctaaagaaactactagtgacacaacatcatcatcatcatcttatagtggtactcaaagt
cggacagtctcaccaaacatagcaggaaatggagtcatagaacagacagaaaaatctcat
ccaagaagccctaacgtggtatctgtcattttgagtcaaagaaatactgttcctgaggaa
gaattaaatccaaagataatagctttgcagaatgcgcagagaaaacgaaaaatggaacat
gatggctcactttttcaagcagtaggaattggaacattattacagcaagcagatgaccaa
acaactactacatcactttcctggaaacgtgtaaaaggatgcaagtctagtgaaccaaat
ggagtggagcaaaagacaattattttaataccctctgatttagcatgtagactgctgggg
caatcaatggatgagagtggattgccacagctgaccagctatgattgtgaagtgaacgct
cccatacaaggcagcagaaaccttctacaaggggaagacttactcagagctttggatcaa
gttaactga
DBGET
integrated database retrieval system
