KEGG   Dipodomys merriami (Merriam's kangaroo rat): 138833846
Entry
138833846         CDS       T11079                                 
Symbol
Prpf19
Name
(RefSeq) pre-mRNA-processing factor 19
  KO
K10599  pre-mRNA-processing factor 19 [EC:2.3.2.27]
Organism
dmer  Dipodomys merriami (Merriam's kangaroo rat)
Pathway
dmer03040  Spliceosome
dmer04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:dmer00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    138833846 (Prpf19)
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    138833846 (Prpf19)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:dmer03041]
    138833846 (Prpf19)
   04121 Ubiquitin system [BR:dmer04121]
    138833846 (Prpf19)
   03400 DNA repair and recombination proteins [BR:dmer03400]
    138833846 (Prpf19)
Enzymes [BR:dmer01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     138833846 (Prpf19)
Spliceosome [BR:dmer03041]
 Complex B
  Other components
   Prp19 complex
    138833846 (Prpf19)
 Complex C
   Prp19-CDC5 complex
    138833846 (Prpf19)
Ubiquitin system [BR:dmer04121]
 Ubiquitin ligases (E3)
  U-box type E3
   138833846 (Prpf19)
DNA repair and recombination proteins [BR:dmer03400]
 Eukaryotic type
  Other factors with a suspected DNA repair function
   PSO4 complex
    138833846 (Prpf19)
SSDB
Motif
Pfam: WD40_Prp19 Beta-prop_WDR5 Beta-prop_WDR3_1st Beta-prop_THOC3 WD40 WD40_CDC20-Fz WD40_WDHD1_1st Prp19 Beta-prop_WDR36-Utp21_2nd Beta-prop_EML_2 WD40_Gbeta Beta-prop_WDR3_2nd WDR55 Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd EIF3I Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 Beta-prop_WDR36-Utp21_1st Beta-prop_EML ANAPC4_WD40 Beta-prop_WDR75_1st Beta-prop_IFT140_1st WD40_MABP1-WDR62_1st Beta-prop_SCAP Beta-prop_Aladin Beta-prop_EIPR1 Beta-prop_TEP1_C NBCH_WD40 Beta-prop_WDR41 WDR90_beta-prop_4th Beta-prop_IFT122_1st Beta-prop_HPS5 Beta-prop_Vps41 U-box Beta-prop_DCAF4 PEP5_VPS11_N Beta-prop_RIG_2nd WD40_RFWD3 Beta-prop_WDR19_1st Beta-prop_SPT8 Beta-prop_ACSF4 PROPPIN Beta-prop_Nup120_160 eIF2A Cytochrom_D1 RMC1_N Beta-prop_WDR35_TULP_N Beta-prop_DCAF12 zf-Nse Beta-prop_VPS8 Beta-prop_LRRK2 DUF1830 ATG16 Cep57_MT_bd
Other DBs
NCBI-GeneID: 138833846
NCBI-ProteinID: XP_069888325
LinkDB
Position
Unknown
AA seq 504 aa
MSLICSISNEVPEHPCVSPVSNHVYERRLIEKYIAENGTDPINNQPLSEEQLIDIKVAHP
IRPKPPSATSIPAILKALQDEWDAVMLHSFTLRQQLQTTRQELSHALYQHDAACRVIARL
TKEVTAAREALATLKPQAGLIVPQAVPSSQPSVVGAGEPMDLGELVGMTPEIIQKLQDKA
TVLTTERKKRGKTVPEELVKPEELSKYRQVASHVGLHSASIPGILALDLCPSDTNKILTG
GADKNVVVFDKSSEQILATLKGHTKKVTSVVFHPSQELVFSASPDATIRIWSVPNTSCVQ
VVRAHESAVTGLSLHATGDYLLSSSDDQYWAFSDIQTGRVLTKVTDEASGCSLTCAQFHP
DGLIFGTGTMDSQIKIWDLKERTNVANFPGHSGPITSIAFSENGYYLATAADDSSVKLWD
LRKLKNFKTLQLDNNFEVKSLIFDQSGTYLALGGTDVQIYICKQWTEILHFTEHSGLTTG
VAFGHHAKFIASTGMDRSLKFYSL
NT seq 1515 nt   +upstreamnt  +downstreamnt
atgtcgctcatctgctccatttccaatgaagtgccagagcatccatgtgtgtcccctgtc
tctaatcatgtgtatgagcggcggctcattgagaagtacattgcagagaatggtacagac
cctatcaacaaccagcctctctcggaggagcagctcattgacatcaaagttgctcaccca
atccggcccaaacctccctctgctaccagcatcccagccattctgaaagccttgcaggat
gagtgggatgctgtcatgctgcacagctttaccctgcgccagcagctgcagacgacccgc
caggagctgtcccacgctctctaccagcacgatgctgcctgccgtgtgattgcccgtctc
accaaggaggtcactgctgcccgagaagctctggctactctgaaaccacaagctggtctc
atcgtgccgcaagctgtgccaagctcacagcccagtgttgtgggcgcaggtgagcccatg
gacttgggcgagctggtgggaatgactcccgagattatccagaagctacaagacaaggcc
actgtgctgaccacggagcgtaagaagagagggaagactgtgcctgaggaactggtgaag
ccagaagagctcagcaaataccggcaggtggcatcccacgtggggctgcacagcgccagc
attcctgggatccttgccctggatctctgtccctccgataccaacaagatcctcactgga
ggtgcagataaaaatgttgttgtctttgataagagttctgagcaaatcctggccactctc
aaaggccacaccaagaaagtcaccagtgtggtgtttcacccttctcaggaactggtgttt
tcagcctctccagatgccactatccggatttggtcagtcccgaacacctcatgtgtacag
gttgttcgcgcccatgagagtgctgtcacaggcctcagtctccatgccactggtgactat
ctgctgagctcctctgacgaccagtactgggccttctctgacatccagacggggcgtgtg
ctaaccaaggtgacagatgaggcctctggctgctctctcacctgtgcgcaattccaccct
gatgggcttatttttggaacaggaaccatggactctcagatcaagatctgggacttaaag
gagcgcaccaatgtggccaacttccctggccactcaggtcctatcaccagcatcgccttc
tcagagaacggctactacctggccacagcagctgacgactcctctgtcaagctttgggac
ttgcgtaagcttaagaacttcaagacgttgcagctggacaacaactttgaggtgaagtca
ctgatctttgaccagagtggcacctacctggcccttgggggcacagatgtccagatctac
atctgcaaacagtggacagagattcttcactttacagagcacagtggcctgactacgggg
gtggcctttggacaccacgccaagttcatcgcttcgaccgggatggacagaagcctcaag
ttctacagcctgtag

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