Dipodomys merriami (Merriam's kangaroo rat): 138835833
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Entry
138835833 CDS
T11079
Symbol
Rc3h1
Name
(RefSeq) roquin-1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
dmer Dipodomys merriami (Merriam's kangaroo rat)
Brite
KEGG Orthology (KO) [BR:
dmer00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
dmer03000
]
138835833 (Rc3h1)
04121 Ubiquitin system [BR:
dmer04121
]
138835833 (Rc3h1)
Transcription factors [BR:
dmer03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
138835833 (Rc3h1)
Ubiquitin system [BR:
dmer04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
138835833 (Rc3h1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4_4
Prok-RING_4
zf-CCCH
zf-C3HC4_3
zf-C3HC4
zf-CCCH_UNK
zf-C3HC4_2
FYVE
zf_CCCH_4
zf-CCCH_4
Vesi_VP2
PaaA_PaaC
Baculo_IE-1
zf-RING_4
zf-RING_6
zf-RING_10
Motif
Other DBs
NCBI-GeneID:
138835833
NCBI-ProteinID:
XP_069890539
LinkDB
All DBs
Position
Unknown
AA seq
1131 aa
AA seq
DB search
MPVQAPQWTDFLSCPICTQTFDETIRKPISLGCGHTVCKMCLNKLHRKACPFDQTTINTD
IELLPVNSALLQLVGAQVPEQQPITLCSGVEDTKHYEEAKKCVEELALYLKPLSSARGVG
LNSTTQSVLSRPMQRKLVTLVHCQLVEEEGRIRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEAGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
ANIDPSPDAPPPSWEQLENGLVAVRTVVHGLVDYIQNHSKKGADQQQPPQHSKYKTYMCR
DMKQRGGCPRGASCTFAHSQEELEKFRKMNKRLIPRKLLSASLGQLNEVGLPSTAMLPDE
GAVDLPSRKPSALPNGIVSSGNAVTQLIPRGTDASYDSSLKPGKIDHLSSSAPGSPPDVL
ESVPKSISALPVNPHPIPSRGPADLPPMPITKPLQMVPRGSQLYPAQQADVYYQDPRGAA
PPFEPAPYQQGMYYTPPPQCVSRFVRPPPSAPEPGPPYLDHYSPYLQDRVVNSQYGTQPQ
QYPPMYPPHYDGRRVYPAQSYTREEIFRESPIPIEIPPAAVPSYVPESRERYQPVEGYYP
VAPHPTQIRPSYPREPPYSRLPPPSQPHPSLDELHRRRKEIMAQLEERKVISPPPFAPSP
TLPPTFHQEEFLDEELKVAGKYKGNDYSQYSPWSCDTIGSYIGTKDVKPKDVMAAGSVEM
MNLESKGMRDQRLDFQRRAVESSDDDLIPFGDRPTVSRFGAISRTSKTIYQGAGPIQAMA
PQGAPTKSINISDYSPYGTHGGWGGSPYSPHQNIPTQGHFSERERISVSEVASHGKPLPS
AEREQLRLELQQLNHQISQQTQLRGLEAVSNRLVLQREANTLAGQPQPLPPPKWPGMISS
EQLSLELHQVEREIGKRTRELSMENQCSLDMKSKLNTNKQAENGQPEPQNKVPTEDLTLT
FSDVPNGSALTQENISLLSNKTSSLNLSEDPEGGGDNNDSQRSGVTPSSAP
NT seq
3396 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtacaagctccacaatggacggatttcctctcctgcccaatttgcactcaaact
ttcgacgaaacaattcgaaagcccatcagtttgggctgtggccatactgtctgcaagatg
tgcctgaataaactccaccgcaaggcttgcccttttgaccagaccactatcaatacagac
attgagctcctccccgtgaactcagcattgctgcagctagtgggtgctcaggtccctgag
cagcaacccattaccttgtgtagtggggttgaagatacaaagcattatgaggaagccaag
aagtgtgtagaagaattagcattgtacctgaaaccgctcagcagtgctagaggagtgggt
ctgaatagcactactcagagtgttctgagtcgcccaatgcagaggaagcttgtgacacta
gtccactgccaactagtggaagaagaaggcaggattcgtgccatgagggctgctcgatct
ttaggtgaacgaacagttacagagctcattctccagcatcaaaatcctcaacaactctct
tccaatctttgggcagcagtcagggctagaggctgccaattccttggaccagcaatgcag
gaagaagcacttaagctggttctactggctttggaagatggttctgctttgtcacggaaa
gtgttggttctttttgtggtgcaaaggttggagccacggtttcctcaagcttctaaaaca
agcattgggcatgttgttcaactcctttatagagcctcctgcttcaaggtcactaaacgt
gatgaagactcttctttgatgcagctgaaagaagaatttagaacatatgaagctctgagg
cgagaacatgactctcagatagtgcagattgctatggaagcaggtttaagaattgcacca
gatcagtggtcctctttgctttatggagaccagtctcacaaatctcatatgcagtccatt
attgacaagttgcagaccccagcctcttttgcacagagtgttcaagaactaacaattgct
ctccagcggactggagatccagcaaacttgaaccgactaagaccccatttggaactgttg
gcaaacattgaccctagtccagatgctcctcctccttcttgggaacagctggaaaatggc
ctggttgctgtgcgtacagtggtacatgggctggttgattacatccagaatcacagtaaa
aaaggagcagatcaacagcagcccccacagcatagcaaatataaaacctatatgtgtcga
gatatgaagcagagaggagggtgcccgcggggtgccagctgtacattcgcacactcacaa
gaggaactggaaaaatttcgtaaaatgaacaaacgtctgattcccagaaaactattgagt
gcctctttgggtcaacttaatgaggtggggctgccttcaacagcaatgcttccagatgaa
ggtgcagtggatcttcctagcaggaaaccctctgctctgccaaatggaattgtatcatca
gggaatgcagtaacacagctgattccacgtgggacagatgccagctatgattctagtctg
aaacctggaaagatagatcatctgagcagtagtgctcctggatcccctcctgacgtgctg
gaatctgtccctaagagtatttctgccttacctgtgaatccacatcctataccctcaaga
gggccagcagacttgcctcccatgcctatcaccaaaccacttcagatggtaccacggggt
tctcagttatatccagcacaacaggcagatgtttattatcaggatcctcgaggagctgca
ccaccatttgaaccagcaccttatcagcagggtatgtactatactccaccaccacaatgt
gtgtcccgttttgtccgacctccaccatctgctcctgaacctggtcctccctacttggat
cattattcaccctacctccaagatcgtgtcgtaaactctcagtatggcacacaaccacaa
cagtacccacctatgtatccacctcactatgatggccgtcgagtataccctgctcaatct
tatacaagagaggagattttccgagaaagccccatacctattgagattccacctgcagca
gtaccatcctatgtaccagaatccagagaaagataccagcctgtggagggttactatcca
gtggctcctcatccaacccagatcagaccttcataccccagagaacctccgtatagtcga
cttcctcctccttcacaaccccaccctagtctagatgagctacatcgaagaagaaaggaa
ataatggctcaactagaggaaagaaaagttatctctccacctccttttgcaccttcacca
acattgcctcccacattccatcaagaggaatttttggatgaagaattgaaagtagctggg
aaatacaaaggaaatgactatagccaatactctccttggtcatgtgataccatcggctcc
tacattggaaccaaagatgtaaaacccaaagatgttatggcagcagggagtgtggaaatg
atgaatttggaaagtaaaggtatgagagaccagcgattagattttcagagacgagcagta
gaaagcagtgatgatgacctcattccatttggagatcgaccaacagtatctcggtttggt
gccatctctcgaacttccaaaacaatatatcaaggtgctggcccaatacaggctatggca
cctcagggagctcccacaaaatctattaacatttcagattacagtccatatggaacccat
ggaggctggggaggttctccatattcacctcatcaaaacatacctactcagggacacttc
agtgagagggagagaatatccgtatcagaagtggctagtcacgggaaaccccttccatct
gctgagagggagcaactacgactagaattgcagcaactgaaccatcagattagtcagcag
acccaacttcgtggactagaggctgttagtaacaggctggtgttacaaagggaggcaaac
accttggcaggccagccacaacccctaccacctccaaaatggcctggaatgatctcaagt
gagcagctgagcttagaacttcaccaggtggagagagaaattgggaagagaacccgggaa
ctaagtatggagaaccagtgctctctggacatgaaaagcaagttgaacacaaacaagcaa
gcagaaaatggacaaccagaaccccaaaacaaagttccaaccgaggatcttacattgaca
ttcagtgatgttccaaatggatcagccttgacacaagagaatatcagcctcctgtcaaac
aagaccagctctttgaacctatcagaagaccctgagggaggaggggataacaatgactcc
cagagatcaggagttactcccagttctgctccctaa
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integrated database retrieval system
