Dipodomys merriami (Merriam's kangaroo rat): 138836367
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Entry
138836367 CDS
T11079
Symbol
Col2a1
Name
(RefSeq) collagen alpha-1(II) chain isoform X1
KO
K19719
collagen type II alpha
Organism
dmer Dipodomys merriami (Merriam's kangaroo rat)
Pathway
dmer04151
PI3K-Akt signaling pathway
dmer04510
Focal adhesion
dmer04512
ECM-receptor interaction
dmer04974
Protein digestion and absorption
dmer05165
Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:
dmer00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
138836367 (Col2a1)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
138836367 (Col2a1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
138836367 (Col2a1)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
138836367 (Col2a1)
09160 Human Diseases
09172 Infectious disease: viral
05165 Human papillomavirus infection
138836367 (Col2a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
dmer00536
]
138836367 (Col2a1)
Glycosaminoglycan binding proteins [BR:
dmer00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
138836367 (Col2a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
138836367
NCBI-ProteinID:
XP_069891034
LinkDB
All DBs
Position
Unknown
AA seq
1487 aa
AA seq
DB search
MIRLGAPRSLVLLTLLVAAVLRCQGQDIQEAGSCLQGRQRYNDKDVWKPETCRICVCDNG
TVLCDDIICEDAKDCLHPEIPFGECCPICPADLATASGQPGPKGQKGEPGDIKDIIGPKG
PPGPQGPVGEQGPRGDRGDKGEKGPPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFA
AQMAGAFDEKAGGAQMGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMG
PRGPPGPPGKPGDDGEAGKPGKSGERGLPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKG
EAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVG
PAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGNPGSPGPAGASGNPGTDGIPGAKG
SAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQG
APGPAGEEGKRGARGEPGGAGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAG
PKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKIGPSGTPGEDGRPGPPGPQGARGQPG
VMGFPGPKGANGEAGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPG
PSGFQGLPGPPGPPGEGGKPGDQGIPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGSRG
LPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPG
KDGARGLTGPIGPPGPAGANGEKGDAGLPGPTGSAGARGAPGERGETGPPGPAGFAGPPG
ADGQPGAKGEQGEAGQKGDAGVPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPG
AAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGDPGLQGPAGPPGEKGEAG
DDGPSGADGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPG
PVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGALGAPGAPGPPGSPGPAG
PTGKQGDRGEAGAQGPMGPSGPAGARGIPGPQGPRGDKGDSGEPGERGVKGHRGFTGLQG
LPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAG
PPGNPGPPGPPGPPGPGIDMSAFAGLGQREKGPDPLQYMRADQAAGNLRQHDVEVDATLK
SLNNQIESIRSPEGSRKNPARTCRDLKLCHPEWKSGDYWIDPNQGCTLDAMKVFCNMETG
ETCVYPNPASVPKKNWWSSKSKEKKHIWFGETINGGFHFSYGDDNLAPNTANVQMTFLRL
LSTEGSQNITYHCKNSIAYLDEVAGNLKKALLIQGSNDVEMRAEGNSRFTYTALKDGCTK
HTGKWGKTVIEYRSQKTSRLPIIDIAPMDIGGPEQEFGVDIGPVCFL
NT seq
4464 nt
NT seq
+upstream
nt +downstream
nt
atgatccgcctcggggctccccgatcgctggtgctgctgacgctgctggtcgccgctgtc
cttcggtgtcagggccaggatatccaggaggctggcagctgtttgcagggcaggcagagg
tataatgataaagatgtatggaagcccgagacctgccggatctgtgtctgtgacaatgga
actgtcctctgcgacgacataatctgtgaagacgcgaaagactgcctccaccctgaaatc
cccttcggagagtgctgccccatctgcccagctgacctcgccactgccagtgggcaacca
ggaccaaagggacagaaaggagaacctggagacatcaaggatatcataggacctaaagga
cctcccggacctcagggacctgtaggtgaacaaggacccagaggtgatcgtggtgacaaa
ggagaaaagggtccacctggacctcgtggcagagatggagagcctggaacccctggaaat
cctggtccccctggccctccaggccctcctggtccccctggccttggtgggaactttgcg
gcccagatggctggagcatttgatgagaaggctggtggtgcccagatgggagtaatgcaa
ggtccaatgggccctatgggacctcgaggacccccaggtcctgctggtgctcctggcccc
caaggatttcaaggcaatcccggtgaacctggcgaacctggtgtctctggtcctatgggt
ccccgtggtcctcctggcccccctggaaaacctggtgacgacggtgaagctggaaaacct
ggaaaatctggtgaaagaggccttcctggtcctcagggtgctcgaggcttcccaggaacc
ccaggccttcctggtgtcaaaggtcacagaggctacccaggcctagatggagctaaggga
gaagctggtgctccaggtgtgaagggtgaaagtggctctcctggtgagaatggttctcca
ggcccaatgggtccccgaggcttgcctggtgagagaggacggactggccctgctggtgct
gcgggtgcccggggcaatgatggccagccaggccctgctgggcctccgggtcctgtcggt
cctgctggtggtcctggctttcctggcgctcctggtgctaagggtgaagctggccccaca
ggtgcccggggtcctgaaggtgctcaaggtcctcgaggtgaacctggcaaccctgggtcc
cctgggcctgctggtgcttctggtaaccctggaacagatggtattcctggagccaaagga
tctgctggtgctcctgggattgctggtgctcctggcttccctggacctcgtggccctcct
ggccctcaaggtgcaactggtcctctgggccccaaaggtcagacgggggagcctggtatt
gctggcttcaagggtgaacaaggccccaaaggagaacctggtcctgctggcccccaagga
gccccaggtcctgctggtgaagaaggcaaacgaggtgcccgtggagagcctggtggtgct
gggcccattggtccccctggggaaagaggtgctcctggcaaccgaggtttcccaggtcag
gatggtctggctggtcccaagggagcccctggagagcgaggtcccagtggtcttgctggc
cccaagggagccaatggtgaccctggccgtcctggagaacctggccttcctggggcccgg
ggtctcactggtcgccctggtgatgctggtcctcaaggcaaaattggtccttctggaact
cctggtgaagatggtcgccctggacctccgggtcctcagggagctcgtgggcagccaggt
gtcatgggtttccctggccccaaaggtgccaatggtgaggctggtaaagctggtgagaag
ggactgcctggtgctcctggtcttagaggtcttcctggtaaagatggcgagacaggtgct
gcaggacctcctggccccgctggacctgctggtgaacgaggcgaacagggtgctcctggg
ccatctgggttccagggacttccaggccctcctggtcccccaggtgaaggtggcaaacca
ggtgaccagggtattcctggtgaagctggagccccaggccttgtgggtcccaggggtgag
cgaggtttcccaggtgaacgcggctctcccggtgcccagggccttcaaggttcccgtggt
ctccctggcactcctggcactgatggtcccaaaggtgcgtctggcccagctggtccccct
ggggctcagggccctccaggtcttcaaggaatgccgggggagagaggagcagctggtatc
gctggacccaaaggagacaggggtgatgttggtgagaaaggccccgagggagcccctgga
aaggacggtgcacgaggtttaactggtcccattggtccccctggcccagcaggcgccaat
ggcgagaagggcgatgctggacttcctgggcccactggaagtgctggtgctcgtggtgcc
ccgggtgaacgtggggagactggtcccccaggacctgctggatttgctggacctcctggt
gctgatggccaacctggtgccaagggtgagcagggagaggctggacagaaaggtgatgct
ggtgtccctggccctcagggtccttctggagctcctggaccacagggtcctactggagtg
actggtcctaaaggagcacgaggtgcccaaggccctccgggagccactggattccctgga
gctgctggccgagttggacccccaggctctaatggcaatcctggaccccctggtcctcct
ggtccttctggaaaagatggccccaaaggtgcacgaggagacagcggcccccctggcaga
gctggtgaccctggcctccaaggtcctgcaggaccccctggcgaaaagggagaggctgga
gatgatggtccttctggtgctgatggtcctccaggtccccagggtctggctggtcagagg
ggtattgttggtctacctgggcagcgtggtgagagaggattccctggcctacccggtcca
tcgggtgaacctggcaagcagggtgcccccggcgcatctggagaccgaggcccccctggt
cccgtggggcctcctggcctgacaggtcctgcaggtgaacctggacgagagggcagtcct
ggtgctgatggcccccctggtagagatggcgcagctggagtcaagggtgatcgtggtgag
actggtgccctgggagctcctggagcccctggcccccctggttctcctggccctgctggc
ccaactggaaagcaaggagacagaggagaggctggtgcacaaggccccatgggaccctca
ggaccagctggagcccgtggaatcccaggccctcaaggcccccgaggtgacaaaggagac
tctggagagcctggtgaaaggggagtgaagggacatcgtggcttcactggccttcagggt
cttccgggccctcccggtccttctggagaccaaggtgcttctggtcctgctggtccttct
ggccctcggggtccacctggtcctgtgggtccctctggcaaagatggcgctaatggaatc
cctggtcccattgggcctcctggtcctcgtggacgttcaggcgaaactggccctgctggt
cctcctggaaatcctggaccccctggtcctccaggtccccctggccctggtatcgacatg
tccgcctttgccggcctaggccagagagagaagggtcctgaccccctgcagtacatgcga
gctgaccaggcagctggtaatctgagacaacatgatgttgaggtagatgccacactcaag
tcactcaacaaccagatcgagagcattcgcagtcctgagggttcccgcaagaatcctgcc
cgcacctgccgcgacctgaaactctgccatccagagtggaagagcggagactactggatt
gaccccaaccagggctgtaccttggatgccatgaaggttttctgcaacatggagacaggc
gagacctgcgtctaccccaacccagcaagtgtgcccaagaagaactggtggagcagcaag
agcaaggagaagaaacacatctggtttggagaaaccatcaatggtggcttccatttcagc
tatggagatgacaacctggctcccaacaccgccaatgtccagatgaccttcctgcgcctg
ctgtccaccgagggttcccagaacatcacctaccactgcaagaacagcattgcctacctg
gatgaagtagctggcaacctcaagaaggccttgctcatccagggctccaatgatgtagag
atgagggctgagggcaacagcaggttcacatacactgccctgaaggatggctgcacgaaa
cacactggtaagtggggcaagactgtcatcgagtaccggtcacagaagacctcacgcctc
cccatcattgacattgcacccatggacattggagggcctgagcaggaatttggtgtggac
ataggacctgtctgcttcttgtaa
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integrated database retrieval system
