Dipodomys merriami (Merriam's kangaroo rat): 138837749
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Entry
138837749 CDS
T11079
Name
(RefSeq) pre-mRNA-processing factor 6
KO
K12855
pre-mRNA-processing factor 6
Organism
dmer Dipodomys merriami (Merriam's kangaroo rat)
Pathway
dmer03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dmer00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
138837749
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dmer03041
]
138837749
Spliceosome [BR:
dmer03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
138837749
Complex C
U5 SnRNP specific factors
138837749
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PRP1_N
TPR_14
TPR_19
HAT_PRP39_N
TPR_16
Suf
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
TPR_2
TPR_17
ARM_TT21_2nd
FAT
T7SS_EccA1_N
ARM_TT21_C
Motif
Other DBs
NCBI-GeneID:
138837749
NCBI-ProteinID:
XP_069892794
LinkDB
All DBs
Position
Unknown
AA seq
941 aa
AA seq
DB search
MNKKKKPFLGMPAPLGYVPGLGRGATGFTTRSDIGPARDANDPVDDRHAPPGKRTVGDQM
KKNQAADDDDEDLNDTNYDEFNGYAGSLFSSGPYEKDDEEADAIYAALDKRMDERRKERR
EQREKEEIEKYRMERPKIQQQFSDLKRKLAEVTEEEWLSIPEVGDARNKRQRNPRYEKLT
PVPDSFFAKHLQTGESHTSVDPRQTQFGGLNTPYPGGLNTPYPGGMTPGLMTPGTGELDM
RKIGQARNTLMDMRLSQVSDSVSGQTVVDPKGYLTDLNSMIPTHGGDINDIKKARLLLKS
VRETNPHHPPAWIASARLEEVTGKLQVARNLIMKGTEMCPKSEDVWLEAARLQPGDTAKA
VVAQAVRHLPQSVRIYIRAAELETDIRAKKRVLRKALEHVPNSVRLWKAAVELEEPEDAR
IMLSRAVECCPTSVELWLALARLETYENARKVLNKARENIPTDRHIWITAAKLEEANGNT
QMVEKIIDRAITSLRANGVEINREQWIQDAEECDRAGSVVTCQAAMRAVIGIGIEEEDRK
HTWMEDADSCVAHNALECARAIYAYALQVFPSKKSVWLRAAYFEKNHGTRESLEALLQRA
VAHCPKAEVLWLMGAKSKWLAGDVPAARSILALAFQANPNSEEIWLAAVKLESENNEYER
ARRLLAKARSSAPTARVFMKSVKLEWVLGNIEAAQELCEEALKHYEDFPKLWMMKGQIEE
QGELVEKAREAYSQGLKKCPHSTPLWLLLSRLEEKVGQLTRARAILEKSRLKNPKNPGLW
LESVRLEFRAGLKNIANTLMAKALQECPSSGILWSEAVFLEARPQRKTKSVDALKKCEHD
PHVLLAVARLFWSERKITKAREWFHRTVKIDSDLGDAWAFFYKFELQHGTEEQQEDVRKR
CENAEPRHGELWCTVSKDIANWQKKIGEVLVLVAAGIKNTF
NT seq
2826 nt
NT seq
+upstream
nt +downstream
nt
atgaacaagaagaagaagccattcttgggcatgcccgctccgctcggctatgttccgggg
ctgggccggggtgccactggcttcaccacgcggtcagatattgggcctgctcgggatgca
aatgatcctgtggatgatcgccatgccccaccaggcaagagaactgtgggggaccagatg
aagaaaaaccaggctgctgatgatgatgatgaggatctgaatgacactaactatgatgag
tttaatggctatgccggaagcctcttctcaagtgggccttatgaaaaagatgatgaggaa
gcagatgctatttatgcagctctggataaaaggatggatgaaagaagaaaagaaagaaga
gagcaaagagagaaagaagagattgagaaatatcgaatggaacgtcctaaaatccagcag
cagttttctgatctcaagaggaagttggcagaagtcacagaagaagagtggctgagcatc
ccagaggttggtgatgccagaaacaaacgccagcggaatccacgctatgagaagctgacc
cctgtccccgatagtttctttgccaaacatttgcagactggagagagccacacttctgta
gaccctcgacaaacgcaatttggaggtctgaacactccatacccaggtggcttgaacaca
ccataccccggtggcatgacacctggattgatgacacctggtacaggggagctggacatg
aggaagattggccaagcaagaaacactctgatggacatgaggctgagccaggtgtctgac
tcggtgagtgggcagactgtcgtggaccccaaaggctatctgacggatctaaactctatg
atccccacccacggaggggacatcaatgacatcaaaaaggcacgactgctcctcaagtcc
gttcgggagacaaacccccatcatcctccagcttggattgcttcagcccgccttgaagaa
gtcactgggaagctgcaagtggctcggaatcttattatgaaaggaacagagatgtgcccc
aagagtgaagatgtctggctagaagcagccaggttgcaacctggggacacagccaaggct
gtggtagcccaagctgtccgtcatctccctcagtctgttaggatttacatcagagcagca
gagctggaaacagatattcgagcaaagaagcgggttcttcggaaagcccttgagcatgtt
ccaaactcagttcgcttgtggaaagcagccgtggagctagaagagcctgaagatgctaga
atcatgctcagcagagctgtggagtgctgccctaccagtgtggagctctggcttgctctg
gcgaggctggagacttatgaaaatgcccgcaaggtcttaaataaagctcgtgagaacatt
cctacagaccggcacatctggatcacagctgcaaaacttgaggaagccaatggaaacaca
cagatggtggagaagatcattgaccgggccatcacttccttgcgggcgaatggtgtggag
attaatcgtgagcagtggatccaggatgctgaagagtgtgacagggctggaagtgtagtt
acctgtcaggctgccatgcgagctgtgattgggattgggattgaagaagaagatcggaag
cacacatggatggaggatgctgatagttgtgtggcccataatgccctggagtgtgcacga
gccatttatgcctatgccttgcaagtgtttcccagcaagaagagtgtgtggctacgagct
gcgtactttgagaagaaccatggcaccagggagtctctggaagcacttctacagagggct
gttgcccactgcccaaaggcagaggtgttgtggctcatgggtgcgaagtccaagtggcta
gctggggacgtccctgctgccaggagcatcctggccctggcctttcaggccaaccccaac
agtgaggagatctggctggccgctgtgaaactggagtcagagaacaatgagtatgagcgt
gcccggaggctgctcgccaaggcccggagcagtgcgcccacggcccgtgtgttcatgaag
tctgtgaagctggagtgggttctggggaacattgaggctgcacaggagctgtgtgaggag
gccttgaagcactatgaggactttcccaagctgtggatgatgaaggggcagattgaagag
caaggagagctggtggaaaaggcccgggaggcttacagccagggcttgaagaagtgcccc
cactctacaccgctctggctcttgctttcccggctcgaggagaaggttggacagctgacc
cgcgctcgagccattttggagaagtctcgattgaagaacccaaagaaccctggactgtgg
ttggagtctgtgaggctggagttccgtgcggggctgaagaacatcgccaacacactcatg
gccaaagccctccaggaatgccccagctctggcattctgtggtcagaagccgtcttcctc
gaggcaagaccccagagaaagaccaagagtgtggatgccctgaagaagtgtgagcatgac
ccacatgtgctcctggccgtggccaggctgttctggagtgagcggaagatcaccaaggct
cgggagtggttccaccgcacagtgaaaatcgactctgacctgggggatgcctgggccttc
ttctacaagttcgagctgcagcatggcacggaggagcagcaggaggacgtgagaaagcgc
tgtgagaatgctgagccccgccatggagagctgtggtgcactgtgtccaaagatattgcc
aactggcagaagaagattggggaggtgctggtgctggtggccgcgggcatcaagaacacc
ttctga
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