Dipodomys merriami (Merriam's kangaroo rat): 138838253
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Entry
138838253 CDS
T11079
Symbol
Arid1a
Name
(RefSeq) AT-rich interactive domain-containing protein 1A isoform X1
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
dmer Dipodomys merriami (Merriam's kangaroo rat)
Pathway
dmer03082
ATP-dependent chromatin remodeling
dmer04714
Thermogenesis
dmer05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
dmer00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
138838253 (Arid1a)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
138838253 (Arid1a)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
138838253 (Arid1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
dmer03000
]
138838253 (Arid1a)
03021 Transcription machinery [BR:
dmer03021
]
138838253 (Arid1a)
03036 Chromosome and associated proteins [BR:
dmer03036
]
138838253 (Arid1a)
Transcription factors [BR:
dmer03000
]
Eukaryotic type
Helix-turn-helix
ARID
138838253 (Arid1a)
Transcription machinery [BR:
dmer03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
138838253 (Arid1a)
Chromosome and associated proteins [BR:
dmer03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
138838253 (Arid1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BAF250_C
ARID
Motif
Other DBs
NCBI-GeneID:
138838253
NCBI-ProteinID:
XP_069893652
LinkDB
All DBs
Position
Unknown
AA seq
2284 aa
AA seq
DB search
MAAQVAPAAASSLGNPPPPPSELKKAEQQQREEAGGEAAAAAERGEMKAAAGPESEGPAV
GPPQPLGKELQDGAESNGGGGGGGASGGSGPGAEPDLKNSNGNAGPRPALNNNLPEPPGG
GGGGSSDGVGAPPHSAAAALPPPAYGFGQPYGRSPSAVAAAAAAVFHQQHGGQQSPGLAA
LQSGGGGGGLEPYAGPQQNSHDHGFPNHQYNSYYPNRSAYPPPPQAYALSSPRGGTPGSG
AAAAGSKPPPSSSASVSSSSSSFAQQRFGAMGGGGPAAAGGGTPQPTATPTLNQLLTSPS
SARGYQGYPGGDYGGGPQDGGAGKGPADMASQCWGAAAAAAAAAAAASGGAQQRSHHAPM
SPGSSSGGGGQPLARTPQPSSPMDQMGKMRPQPYGGTNPYSQQQGPLSGPQQGHGYPGQP
YGSQTPQRYPMTMQGRTQSAMGGLSYAQQIPPYGQQGPSGYGQQGQTPYYNQQSPHPQQQ
QPPYSQQPPSQTPHAQSSYQQQPQSQPPQLQSSQPPYSQQPSQPSHQQSPTPYPSQQSTT
QQHPQSQPPYSQPQAQSPYQQQQPQQPASSTLSQQAAYPQPQSQQSQQTAYSQQRFPPPQ
ELSQDSFGSQASSAPSMTSSKGGQEDMNLSLQSRPSSLPDLSGSIDDLPMGTEGALSPGV
STSGISSSQGEQSNPAQSPFSPHTSPHLPGIRGPSPSPVGSPASVAQSRSGPLSPAAVPG
NQMPPRPPSGQSDSIMHPSMNQSSIAQDRGYMQRNPQMPQYSSPQPGSALSPRQPSGGQM
HTGMGSYQQNSMGSYGPQGGQYGPQGGYPRQPNYNALPNANYPNAGMAGSMNPMSAGGQM
HGQPGIPPYGTLPPGRMSHASMGNRPYGPNMANMPPQVGSGMCPPPGGMNRKTQESAVAM
HVAANSIQNRPPGYPNMNQGSMMGTGPPYGQGINSMAGMINPQGPPYPMGGTMANNSAGM
AASPEMMGLGDVKLTPATKMNNKADGTPKTESKSKKSSSSTTTNEKITKLYELGGEPERK
MWVDRYLAFTEEKAMGMTNLPAVGRKPLDLYRLYVSVKEIGGLTQVNKNKKWRELATNLN
VGTSSSAASSLKKQYIQCLYAFECKIERGEDPPPDIFAAADSKKSQPKIQPPSPAGSGSM
QGPQTPQSTSSSMAEGGDLKPPTPASTPHSQIPPLPGMSRSNSVGIQDAFPDGSDPTFQK
RNSMTPNPGYQPSMNTSDMMGRMSYEPNKDPYGSMRKAPGSDPFMSSGQGPNGGMGDPYS
RATGPGLGNVAMGPRQHYPYGGPYDRVRTEPGIGPEGNMGSGAPQPNLMPSTPDSGMYSP
SRYPPQQQQQQQQRHDSYGNQFSTQGTPSGSPFPSQQTTMYQQQQQQNYKRPMDGTYGPP
AKRHEGEMYSVPYSTGQGQPQQQQLPPAQSQSASQQQAAQPSPQQDVYNQYSNAYPATAT
AATERRPAGGPQNQFPFQFGRDRVSAPPGSNAQQNIPPQMMGGPIQASADVAQQGTMWQG
RNDMTYNYANRQSTSSAPQGPAYHGVNRTDEMLHTDQRANHEGPWPSHGTRQPPYGPSAP
VPPMTRPPPSNYQPPPSMQNHIPQVSSPAPLPRPMENRTSPSKSPFLHSGMKMQKAGPPV
PASHIAPTPVQPPMIRRDITFPPGSVEATQPVLKQRRRLTMKDIGTPEAWRVMMSLKSGL
LAESTWALDTINILLYDDNSIMTFNLSQLPGLLELLVEYFRRCLIEIFGILKEYEVGDPG
QRTLLDPGRFSKVSSPAPTEGEEEEELLGLKLEEEEEEEEVVENDEEMAFLSKDKPASEN
SEEKLVSKFDKLPVKIVQKNDPFVVDCSDKLGRVQEFDSGLLHWRIGGGDTTEHIQTHFE
SKTELLPSRLHVPCPTASRKHVITEGTVGTTEQEGPPPDGPPEKRITATMDDMLSTRSST
LNEEGVKSAEATKESSKFPFGISPAQSHRNIKILEDEPHSKDETPLCTLLDWQDSLAKRC
VCVSNTIRSLSFVPGNDFEMSKHPGLLLILGKLILLHHKHPERKQAPLTYEKEEEQDQGV
SCNKVEWWWDCLEMLRENTLVTLANISGQLDLSPYPESICLPVLDGLLHWAVCPSAEAQD
PFSTLGPNAVLSPQRLVLETLSKLSIQDNNVDLILATPPFSRLEKLYSTMVRFLSDRKNP
VCREMAVVLLANLAQGDSLAARAIAVQKGSIGNLLGFLEDSLAATQFQQSQASLLHMQNP
PFEPTSVDMMRRAARALLALAKVDENHSEFTLYESRLLDISVSPLMNSLVSQVICDVLFL
IGQS
NT seq
6855 nt
NT seq
+upstream
nt +downstream
nt
atggccgcgcaggtcgcccccgccgccgccagcagcctgggcaacccgccgccgccgccc
tcggagctgaagaaagccgaacagcagcagcgggaggaggcggggggcgaggcggcggca
gcggccgagcgcggggaaatgaaggcagccgccggcccggagagcgagggccccgccgtg
gggccgccgcagccgctgggaaaggagctgcaggacggggccgagagcaatgggggtggc
ggcggcggcggagccagcggcggcagcgggcccggcgcggagccggacctgaagaactcg
aacgggaacgcgggccctaggcccgccctgaacaataacctcccggagccgcccggcggc
ggcggcggcggcagcagcgacggagtgggggcgcctcctcactcggccgcggccgccttg
ccgcccccagcctacggcttcgggcagccctacggccggagcccgtctgccgtcgccgcc
gcggcggccgccgtcttccaccaacaacatggcggacaacaaagccctggcctggcagcg
ctgcagagcggcggcggcggcgggggcctggagccctacgcggggccccagcagaactcg
cacgaccacggcttccccaaccaccagtacaactcctactaccccaaccgcagcgcctac
cccccgcccccccaggcctacgcgctgagctccccgagaggtggcactccgggctccggc
gcggcggccgccggctccaagccgcctccctcctccagcgcctcggtctcctcgtcgtcg
tcgtccttcgctcagcagcgcttcggggccatggggggaggcggccccgcagcggccggc
gggggaactccccagcccaccgccacccccaccctcaaccaactgctcacgtcgcccagc
tcggcccggggctaccagggctaccccgggggcgactacggcggcgggccccaggacggg
ggcgcgggcaagggcccggcggacatggcctcgcagtgctggggggctgctgcggcggcg
gccgcggcggcagcggccgcctcgggaggggcccaacaaaggagccaccacgcgcccatg
agccccgggagcagcagcggcggtggggggcagccgctcgcccggacccctcagccatcc
agtccaatggatcagatgggcaagatgagacctcagccatatggcgggactaacccatac
tcacaacaacagggacctctgtcaggaccacagcaaggacatgggtacccagggcagcca
tatgggtcccaaacaccacagcggtacccaatgaccatgcaaggtcggacgcagagtgcc
atgggaggcctctcttatgcacagcagattcctccttatggacaacaaggcccaagcggg
tatggtcagcagggccagactccatattacaaccagcaaagtccccacccccagcagcag
cagccaccttactcccagcaaccaccatcccagacccctcatgcccaatcttcatatcag
cagcagccacagtctcaaccaccacagcttcagtcttctcaacctccatattcccaacag
ccatcccagccttcacatcagcaatccccaactccatacccttctcagcagtccacaacg
cagcagcatccccagagccagcccccttactcacagccacaggcacagtctccctaccag
cagcagcaacctcagcagccagcatcctcgacgctctcccagcaggctgcatatcctcag
cctcagtctcagcagtcccagcaaactgcctattcccaacagcgcttccctccaccacag
gagctttctcaagattcatttgggtctcaggcatcctcagccccctcaatgacctctagt
aaaggaggacaagaagatatgaacctgagccttcagtcaagaccctccagcttgcctgat
ctatctggttcaatagatgatctccccatggggacagaaggagctctgagtcctggagtg
agcacatcagggatttccagcagccaaggagagcagagcaacccagctcagtctcctttc
tcgcctcatacctcccctcaccttcctggcatccgaggcccctccccttcccctgttggc
tctcctgccagtgttgctcagtctcgctcaggaccactctcgcctgctgcagtgccaggc
aaccagatgccacctcggccacccagtggccagtcagacagcatcatgcatccttccatg
aaccaatcaagcattgcccaagatcgaggttatatgcagaggaaccctcagatgccccaa
tacagttccccccagcccggctcggccttatctccacgtcagccttctggaggacagatg
cacacaggcatgggctcctaccagcagaactccatggggagctacggtccccaagggggt
cagtatggcccacaaggaggttaccccaggcagccaaactataatgccttgcccaatgcc
aactaccccaatgcaggcatggctggaagcatgaatcccatgagtgctggaggtcaaatg
catgggcagcctggtatcccaccttatggcactctccctccagggagaatgagtcatgcc
tcaatgggtaacaggccttatggtcctaatatggccaatatgccacctcaggttgggtct
gggatgtgtccccctccagggggcatgaaccggaaaactcaagaatctgctgtcgccatg
catgttgctgccaattctatacaaaacaggccaccaggctatcccaatatgaatcaaggg
agcatgatgggaactggacctccctatggacaagggatcaatagcatggctggcatgatc
aacccacagggacccccgtatcccatgggtggaaccatggccaacaattcagcagggatg
gcagccagcccagagatgatgggccttggggatgtcaagttaactccagctaccaaaatg
aacaacaaggcagatgggacacccaagacagaatctaaatccaagaaatccagttcttct
actaccaccaatgagaagatcaccaagttatatgagctaggtggtgaacctgagaggaag
atgtgggtggaccgttatctggccttcacggaggaaaaggcaatgggcatgacaaatctg
cctgctgtgggtagaaaacctctggacctttaccgcctctatgtgtcagtaaaagaaatt
ggtggattgactcaggtcaataagaacaaaaagtggcgggaacttgcgaccaacctcaat
gtgggcacatcaagcagtgctgccagctccttaaaaaagcagtatatccaatgtctctat
gcctttgagtgcaagattgaacggggagaagaccctcccccggacatctttgcagctgct
gattccaagaagtcccagcccaagatccagcctccctctcctgcgggatcagggtctatg
caggggccacagactcctcagtcaaccagcagttccatggcagagggaggagacctgaag
ccaccaactccagcatccacaccacacagtcagattccccctttgccaggcatgagcagg
agcaattctgtcgggatccaggatgcctttcctgatggaagtgaccccacattccagaag
cggaattccatgactccaaaccctgggtaccagcccagtatgaatacctctgacatgatg
gggcgcatgtcctatgagccaaataaggatccttacggcagcatgagaaaagctcctggg
agtgatcccttcatgtcctcagggcagggccccaacggagggatgggtgacccttacagc
cgtgctactggccctgggctgggaaatgtggctatgggaccacgacagcactatccctat
ggaggtccttatgacagagtgaggactgagcctggaataggtcctgagggaaatatgggc
agtggagccccacagccaaatctcatgccttccaccccagactcggggatgtattctcct
agccgctaccccccacagcagcagcagcagcaacagcaaagacatgattcctatggcaat
cagttctccacccaaggcaccccatctggcagccctttccccagccagcagaccacaatg
tatcaacagcagcaacaacagaattataagcggccaatggatggcacatatggtcctcct
gccaagcggcatgaaggggagatgtacagtgtgccatacagcactgggcaggggcagcct
cagcagcagcagttgcccccagcccagtcccaatctgccagccagcaacaagctgcccag
ccttcccctcagcaagatgtgtacaaccagtatagcaatgcctatcctgctactgccacc
gctgcaactgagcgccgaccagcaggcggcccccagaaccagtttccattccagtttggc
cgagaccgtgtctctgcaccccctggctccaatgcccagcagaacataccaccacaaatg
atgggtggtcctatacaggcatcagctgacgttgctcagcaaggcaccatgtggcagggg
cgtaatgacatgacctataattatgccaacaggcagagcacaagctctgctccccagggt
cctgcatatcatggtgtgaaccgaacagatgaaatgctgcatacggatcagagggccaac
catgaaggcccatggccttcccatggcacacgccagcctccatatggcccctctgccccc
gtgcctcccatgacaagaccccctccatctaattatcagcccccaccaagcatgcagaat
cacattcctcaggtatccagccccgctcccctgccccggccaatggagaaccgcacctct
cctagcaagtctccattcctgcactctgggatgaaaatgcaaaaggcaggtccaccagta
cctgcctcacacatagcacctacccctgtgcagccccccatgattcggcgggatatcacc
tttccacctggctctgttgaagccacacagcctgtgttgaagcagagaaggcggctcaca
atgaaagacattggaaccccggaggcatggcgggtaatgatgtccctcaagtctggtctc
ctggcagagagcacatgggcattagacaccattaacatcctactgtatgatgacaacagc
attatgaccttcaacctcagtcagctcccagggttgctagagctccttgtggagtacttc
cgtcgatgcctgattgagatttttggcattttaaaggaatatgaggtgggtgacccagga
caaagaacactactggaccctggaagattcagtaaggtgtctagtccagcccccacagaa
ggggaggaagaagaagaacttctaggtctgaaactagaggaggaggaggaggaagaagaa
gtagttgaaaatgatgaggagatggcctttttgagcaaggacaagccagcttcagagaat
agtgaggagaagctagtcagcaagtttgacaagcttccagtaaagattgtacaaaagaat
gacccatttgtggtggactgctcagataagcttgggcgtgtgcaggagtttgacagtggc
ttgctacactggcggattggtggtggggacaccactgagcatatccagacccactttgag
agcaaaacagaactgctgccttctcggcttcatgtgccatgtcccacagcctcccggaaa
catgtcatcacagagggcacagtagggacgacagagcaggaagggccccctcctgatggc
ccaccagaaaaacggatcacagccaccatggatgatatgttgtccacccgctctagcaca
ttgaacgaggagggagttaagagtgcagaggccaccaaggaaagcagcaagtttccattt
ggcatcagtccagcacagagccaccggaacatcaagatcctagaagatgagccccacagt
aaggacgagaccccactgtgtacccttctggactggcaggattcccttgccaagcgctgt
gtgtgtgtctccaataccatccgaagcctgtcatttgtgccaggcaacgactttgagatg
tctaaacacccagggctgctgcttatcctgggcaagctaatcctgctgcaccacaagcac
ccagaacggaagcaggcaccactgacttacgagaaagaggaggaacaggaccaaggggtg
agctgtaacaaagttgagtggtggtgggactgtttggagatgctccgggaaaatactttg
gtcacactcgccaacatctcggggcagttggacttatccccatatcctgaaagcatttgc
ctgcctgtcctggacggactcctacactgggcagtttgcccttcagctgaagcccaggac
cctttctccaccctgggccccaatgccgtcctctccccccagagactggtcttagaaacc
ctcagcaaactcagcatccaggacaacaatgtggacctgatcctggccacaccccccttc
agccgtctggagaagttgtacagcaccatggtgcgcttcctcagtgaccgaaagaaccca
gtgtgccgagagatggccgtggtactgctggccaacctggcacagggggacagcctggca
gcccgtgccatcgcagtgcagaagggcagcatcggcaacctcctaggcttccttgaggac
agccttgctgccacacagtttcagcagagccaagccagcctcctccacatgcagaaccca
ccctttgagccaactagtgtggacatgatgcggcgtgctgcgcgtgcgctgctagccttg
gccaaggtggatgagaaccactcagagttcactctgtatgagtcaaggctgttggacatc
tcggtgtcaccactgatgaactcattggtttcacaagtcatttgtgatgtactgttttta
attggccagtcatga
DBGET
integrated database retrieval system
