Dipodomys merriami (Merriam's kangaroo rat): 138839001
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Entry
138839001 CDS
T11079
Name
(RefSeq) vacuolar protein sorting-associated protein 11 homolog
KO
K20179
vacuolar protein sorting-associated protein 11
Organism
dmer Dipodomys merriami (Merriam's kangaroo rat)
Pathway
dmer04140
Autophagy - animal
dmer04148
Efferocytosis
dmer05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
dmer00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
138839001
04148 Efferocytosis
138839001
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
138839001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
dmer04131
]
138839001
Membrane trafficking [BR:
dmer04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
138839001
Hops complex
138839001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PEP5_VPS11_N
TPR_PEP5_VPS11
VPS11_N
VPS11_C
Clathrin
zf-C3HC4_2
zf-RING_2
TPR_Vps41
zf-C3HC4
zf-rbx1
TPR_GEMI5
zf-C3H2C3
zf-RING_5
zf-RING_UBOX
DUF1993
zf-RING_11
zf-HC5HC2H
zf-ANAPC11
zf-C3HC4_3
DLP_helical
zf-RING-like
zf_RING_Vps8_fungal
DUF5847
Motif
Other DBs
NCBI-GeneID:
138839001
NCBI-ProteinID:
XP_069894740
LinkDB
All DBs
Position
Unknown
AA seq
941 aa
AA seq
DB search
MAAYLQWRRFVFFDKELVKEPLGNDGAAPGAAPAPGLPASKLLCLPPGITVCDSGRGSLV
FGDMEGQIWFLLRSLQLTGFQAYKLRVTHLYQLKQHNILASVGEDEEGINPLVKIWNLEK
RDGGNPLCTRIFSAIPGTEPTVVSCLTVHENLNFMAIGFTDGSVTLNKGDITRDRHSKSQ
ILHKGNYPVTGLAFRQAGKTTHLFVVTTENVQSYIVSGKEYPRVELDTHGCGLRCSALSD
PSQDLQFIVAGDECVYLYQPDERGPCFAFEGHKLIAHWFRGYLVIVSRDRKVSPKSDFTS
RDSQSSDKQILNIYDLCNKFIAYSAVFEDVVDVLAEWGSLYVLTRDGRVHALQEKDTQTK
LEMLFKKNLFEMAINLAKSQHLDSDGLAQIFMQYGDHLYSKGNHDGAVQQYIRTIGKLEP
SYVIRKFLDAQRIHNLTAYLQTLHRQSLANADHTTLLLNCYTKLKDSSKLEEFIKTKSES
EVHFDVETAIKVLRQAGYYSHALYLAENHAHHEWYLKIQLEDIKNYQEALRYIGKLPFEQ
AESNMKRYGKTLMHHIPEQTTQLLKGLCTDYRPSLEGRGDREAPSCQANSEEFIPIFANN
PRELKAFLEHMSEVQPDSPQGIYDTLLELRLQNWAHEKEPQAKEKLHAEAISLLKSGRFC
DVFDKALVLCQMHDFQDGVLYLYEQGKLFQQIMHYHMQHEQYRQVITVCERHGEQDPSLW
EQALSYFARKEEDCKEYVAAVLKHIENKNLMPPLLVVQTLAHNSTATLSVIRDYLVQKLQ
KQSQQIAQDELRVRRYREETSRIRQEIQELKASPKIFQKTKCSICNSALELPSVHFLCGH
SFHQHCFESYSESDADCPTCLPENRKVMDMIRAQEQKRDLHDQFQHQLKCSNDSFSVIAD
YFGRGVFNKLTLLTDPPTARLTPNLEAGLQRDLLMHSRRGT
NT seq
2826 nt
NT seq
+upstream
nt +downstream
nt
atggcggcctacctgcagtggcggcgcttcgtcttcttcgacaaggagctggtgaaggag
ccgctgggtaacgatggggctgctcccggcgccgcgcctgcccccggactgcccgcctcc
aagctcctttgcctccctccgggcatcactgtctgcgactcggggcgggggagcctggtc
tttggcgatatggaaggccagatctggttcttgctgcgttccctacagcttacaggcttc
caggcctacaaactacgagtgacacacctatatcaactgaagcagcacaatattctagca
tctgttggtgaggatgaagagggtattaaccccctggtaaagatctggaacttggagaag
agagatggcggcaacccactctgtactcgaatcttctctgccatcccaggaacagaacca
actgttgtgtcttgtttgactgtccatgaaaatctcaactttatggccattggtttcaca
gatggcagtgttacattgaacaaaggagacatcacccgggatcggcatagtaagagccag
attttgcacaaaggcaactatcctgttacgggactggccttccgtcaagcaggaaagacc
actcacttgtttgttgtgacaactgagaatgtccagtcctatatagtttctggaaaggag
tacccgcgagtggagttggatacccacggttgtgggctacggtgctcagccctgagtgac
ccttctcaggacctgcagttcattgtggccggggacgagtgtgtctacctataccaacct
gatgaacgagggccctgcttcgcctttgagggccataagctcattgcccactggtttaga
ggataccttgtcattgtctcccgtgaccggaaggtttctcccaaatcagactttaccagc
agggactcacagagttctgacaagcagattctcaacatctatgatctgtgcaacaagttc
atagcctacagcgctgtctttgaggatgtagtggatgtgcttgctgagtggggctccttg
tacgtgctgacgcgggatgggcgggtccacgcactgcaggagaaggacacacagaccaag
ctggagatgttgttcaagaagaacctatttgagatggcaattaacctggccaagagccaa
catctggatagcgatggattggcccaaatcttcatgcagtatggagaccatctctatagc
aaaggcaaccacgatggagctgtccagcagtatattcgaaccattgggaagttggagcca
tcctatgtgatccgcaagtttctggatgcccagcgcatccacaacctgactgcctaccta
cagaccctgcaccgacaatccctggccaatgctgaccataccaccctgctcctgaactgc
tacaccaaactcaaggacagctccaagttggaagaattcatcaagacaaagagcgagagt
gaagtgcattttgatgtagagacagccatcaaggtcctccggcaagctggctactactcc
cacgccctctacctggctgagaaccacgcacaccatgagtggtacctgaagatccagctg
gaggatatcaagaattaccaggaagcccttcggtacatcggcaagctgcctttcgagcag
gcagagagcaacatgaagcgttatgggaagaccctcatgcaccacataccagagcagaca
acacagctgctaaagggactttgtactgactatcggcccagtctggaaggtcgaggcgat
agagaggctccaagctgccaagccaactctgaggagttcatccccatctttgcaaacaac
ccccgagagctgaaagccttcctggagcacatgagtgaagtgcagccagactcaccccag
ggtatctacgacacacttcttgagctgcggctgcagaactgggcccatgagaaggaaccg
caggccaaagagaagcttcatgcagaggccatctccctactgaagagcggccgcttctgt
gatgtctttgacaaggcgctggtgctgtgtcagatgcatgacttccaggatggggtcctt
tacctctatgaacagggaaagctgttccagcagattatgcactaccacatgcagcacgag
cagtaccggcaggtgatcactgtctgtgagcgccatggggagcaggacccctccttgtgg
gaacaggccctcagctacttcgcccgcaaggaggaggactgcaaggagtacgtggcagct
gtactcaagcacatcgaaaacaagaaccttatgccaccccttctagtggtgcagactctg
gctcacaactctacagccaccttgtccgtaatcagagactaccttgtccaaaaactgcag
aaacagagtcagcagattgcacaggatgagctgcgggtacggcggtaccgagaggagacc
tcccgcatccgccaggagatccaagagctcaaagcgagtccgaagattttccagaagacc
aagtgcagcatctgtaacagtgccttggagttgccctccgtgcatttcctgtgtggccac
tccttccaccagcattgctttgagagttactcagaaagtgatgctgactgtcccacctgc
ctccccgaaaatcggaaggtcatggatatgatccgggcccaggaacaaaaacgagacctc
catgaccagttccagcatcagctgaagtgctccaatgacagcttctctgtgattgctgac
tactttggccgaggggtattcaacaagttgactctgctgactgaccctcccacagccagg
ctgactcccaacctggaggctgggctgcagcgggacctgctcatgcactccaggaggggc
acttag
DBGET
integrated database retrieval system
