Dipodomys merriami (Merriam's kangaroo rat): 138839469
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Entry
138839469 CDS
T11079
Name
(RefSeq) protocadherin-11 X-linked isoform X1
KO
K16498
protocadherin delta 1
Organism
dmer Dipodomys merriami (Merriam's kangaroo rat)
Pathway
dmer03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
dmer00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
138839469
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
dmer01009
]
138839469
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
dmer04515
]
138839469
Protein phosphatases and associated proteins [BR:
dmer01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
138839469
Cell adhesion molecules [BR:
dmer04515
]
Cadherins
Protocadherins
138839469
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_2
Cadherin_CELSR2_9th
SPAR
DUF6377
Motif
Other DBs
NCBI-GeneID:
138839469
NCBI-ProteinID:
XP_069895141
LinkDB
All DBs
Position
Unknown
AA seq
1389 aa
AA seq
DB search
MSSPPPPLPSPPLLSSFFPFSLLVFCGLIQSTITIVPGMDLLSGTYIFAVLLACVVFQSG
AQEKNYTIREEMPENVLIGDLLKDLNLSFIPDKSLTSPMQFKLVYKTGDVPLIRIEEGTG
EIFTTGARIDREKLCAGIMLDARCFYEVEVAVLPDEIFRLVKIRFLIEDINDNAPLFPAT
VINISIPENSAINSRYALPAAIDPDTGINGVQNYHLIKGQNIFDLDIIETPEGDKMPQLI
VQKELDREEKDTYVMKVKVEDGGFPQRSSTAILQVSVGDTNDNRPIFKEQEIEVSIPENA
PVGSSVTQLHATDADIGENARIHFYFSNLVSNLAKRLFHLNTTTGLITVKEPLDREESQS
HKLLVLASDGGSTPASAMVLINVTDINDNVPSIDIRYIVNPTNGTVMLSENAPLNTKIAL
ITVTDKDADHNGRVTCFTDHEVPFRLRPVFSNQFLLETAAYLDYESTREYAIKLLAADAG
KPPLNQSSMLLIKVKDENDNAPVFTQPFISLSIPENNSPDTQLTKISASDADSGRNAEIT
YLLGSDAPPEFNLDRHTGILTAVKKLDREKQEKYYFTVLAIDNGIPPLMTNATVFVTVLD
QNDNNPIFTHNEYNFYVPENLPKHGTVGLITVTDPDYGENSAVNLSILDVNDEFTIDPQT
GVIRPNISFDRERQESYIFYVKAEDGGRVSRSSTAKVTINVVDVNDNKPVFVIPPSNYSF
ELVLPSTSPGTVVFNALAIDNDTGMNAELVYSITGGNTKGLFVIDQVSGNITLKEKCAVA
DLGLHRLIVRAMDLGQPDSLFSFIVVNLFVNETVTNATLVRELVRKGFETPVTQNIETTD
ASSPTSDYVKIMVAIVAGTITVILVIFITAVVRCHQSPHLKASQKNKQNSEWVTPNPENR
QMIMMKKKKKKKKKKHAPKNLLLNFVTIEEAKADNADNDGNSVTLDLPIELEEQTMGKYN
WGTTPTTFKPESPDLALHYKSASPQPAFQIQPETPLNSKHHIIQELPLDNTFVGCDSISK
CSSSSSDPYSVSECSYQVTTFKTPVSVHARPQKKEVVRSRTPMKESMTVEIWTHPQPQQK
SEGKKAGKSQRRVTFHLPEGSQESSSDGGLADHEPGSLPSTSHALPFGYPQEEYFDHAAP
INRTEGDGNSDPESAVLPGLKKAAEITVQPTVEEASDNCTQECLVLGHSDACWMPASLIH
SSPSQMQASSLCHSPPLTRSSLRRQSPPVTQTIALCHSPSVTHTMVLCHSPPPIQASVLQ
HSASLAQATVLCHSPPPTQASALSYSPPLAQGAATHHSSPLPQAATFHHNQAQPPMGSQQ
GWVQGAGADGLHFLDQGGKGSTRAQFYTMSEKLHKSDDSIKVIPLTTFTSGQQARPSRSD
SPIMEEHPL
NT seq
4170 nt
NT seq
+upstream
nt +downstream
nt
atgtcttctcccccccctcctcttccttctcctccccttctctcctctttctttcccttc
tctctgttagtgttctgtgggttgatacagagcaccattacaatcgtgcctggtatggac
ttgttgtccgggacgtatatatttgcggtcctgttagcatgcgtcgtgtttcagtctggc
gcccaggagaagaactacaccatccgagaagaaatgccagaaaacgtcctaataggcgac
ttgttgaaagacctcaacttgtcatttattccagacaagtccttaacatctcctatgcaa
ttcaagcttgtgtacaagaccggcgatgtgccactgattcggattgaagagggtactggt
gagatcttcactactggtgctcgcattgatcgtgagaaattatgtgctggtatcatgttg
gatgctcgttgcttttacgaagtggaggttgccgttttgccagatgaaatatttagactg
gttaagatacgctttctgatagaagacataaatgataatgcaccattattcccggcaaca
gttatcaacatatcaattccagaaaactcagctataaactctcgatatgccctcccagca
gccattgatcctgacacaggaataaatggggtacaaaactaccacctaattaagggacaa
aacatttttgaccttgatatcattgaaacaccagaaggagacaaaatgccacagctgatt
gttcaaaaggaattggatagagaagaaaaagatacctatgtgatgaaagtaaaggtagaa
gatggtggctttcctcaaagatctagtaccgctattttgcaagtaagtgttggtgataca
aatgataaccgtccaatcttcaaggaacaggaaattgaagtcagtattccagaaaatgct
cctgttggttcttcagtaacacagcttcatgccacagatgccgatattggtgaaaatgcc
aggattcatttttattttagcaatctagtctctaaccttgccaagagactatttcacctt
aacaccactacgggacttatcacagtcaaagaaccactggatagggaagaatcacaaagc
cacaagttactggttttggcgagtgatggtggatcaacaccagcaagtgcaatggtgctg
ataaatgttaccgatatcaatgataatgtcccttcaatcgacatcagatacattgtcaat
ccaaccaatggcactgtgatgctttctgaaaatgctccgctcaatactaaaattgctctt
ataactgtgacagacaaggatgctgaccacaatggtagagtgacgtgcttcacagatcat
gaagttcctttcagattgagaccagtattcagtaatcagttcctgttggagactgcagca
tatcttgactatgagtccaccagagagtatgccattaaattattggctgcagatgctggc
aaacctcctttgaatcagtcatccatgctgctcatcaaagtgaaagatgaaaatgacaat
gctccggttttcacacagcctttcataagtctttctattcctgaaaataactcacctgac
acacagttgacaaaaataagcgcatcagatgcagacagtggacgtaatgctgagatcact
tacctgctgggctctgatgctccacctgaattcaacctggaccgtcatacaggcatcctg
actgcagtgaagaaactagacagagaaaagcaggaaaaatactatttcacagttctggct
attgataatggtataccaccattaatgaccaatgccacagtgtttgtgactgttcttgat
cagaatgataacaatccaattttcactcacaatgagtacaacttctacgtcccagaaaac
cttccaaaacatggcacggttggactaatcactgtaactgatcctgattatggagagaat
tctgcagttaatctctctattttagatgtgaatgatgaatttactattgatccacagact
ggtgtcatcaggccaaatatttcatttgatagagaaagacaagaatcttacattttctat
gtcaaggctgaggatggtgggagggtatcacgctcttctactgctaaagtgaccataaat
gtagttgatgtcaatgacaataaaccagtttttgtcattcctccttccaattactccttt
gaattggttctaccttctactagtccaggcacagtagtcttcaatgcccttgcaattgac
aatgacactggcatgaatgcagaacttgtttatagcattactgggggaaacacaaaagga
ctgtttgtaattgaccaagtatcaggcaacatcaccctgaaggagaaatgtgctgttgca
gaccttggcttacatagactgatagttagagctatggacttgggacaacccgattcactt
tttagttttatagttgttaatctgtttgtgaatgagacagtgaccaatgctaccctcgtt
cgtgaattggtgcgcaaaggctttgaaacacctgtgactcaaaacattgaaacaactgat
gcatcctcaccaaccagtgactatgtcaagatcatggttgccattgttgctggcaccata
actgtcatcctggtgattttcatcactgcagtagtaaggtgtcaccaatcaccacatctt
aaggcttctcagaaaaacaagcaaaattctgaatgggttactccaaacccagaaaatcgg
cagatgataatgatgaagaaaaagaagaagaagaagaagaagaagcatgcccccaaaaac
ttgctgctcaacttcgtcactattgaagaagcaaaggcagataatgctgataatgatgga
aacagtgtcacactagaccttcccattgaactggaagagcaaaccatgggcaaatacaac
tggggcactacacccactaccttcaagcctgaaagccctgatttggctctgcactacaaa
tctgcctctccacagccagccttccagatccagcctgaaactcctctgaattcaaagcac
cacatcatccaggaactgcctctagataacacctttgtgggctgtgattccatctccaag
tgctcttccagcagttctgatccctacagtgtttctgaatgcagctatcaagtgacaact
ttcaagaccccagtgtctgtccatgccagaccgcaaaagaaggaggtggtaagatctcgc
actcccatgaaagaatcaatgactgtggagatttggacgcatcctcaaccacagcagaaa
tctgaggggaaaaaagcaggaaagtcccagcgacgggttacatttcacctaccagagggc
tctcaggaaagcagcagtgatggaggtctggcagaccatgagccaggaagccttcccagc
acctctcatgctctgccttttggctatcctcaagaagagtatttcgatcatgctgcaccg
attaaccgcactgaaggagatggcaactctgatcctgaatctgctgtccttcctggacta
aagaaagctgcagaaataacagttcaaccaactgtggaagaagcctctgacaactgcact
caagaatgtcttgtcttgggccactctgatgcctgctggatgccagcttctctaattcat
tccagcccgtcacagatgcaggcctcttctctgtgccacagcccacccttgacacggtca
tcacttcgccgccaaagccctccagtgacacagaccattgctctctgccacagcccttca
gtgacacatactatggtactgtgccacagccctccaccaatacaggcttctgttctccag
catagtgcatctctagcacaagctactgtgctatgccacagcccaccaccaacacaggcc
tcagccctcagctatagcccaccccttgcacagggtgctgcaacccatcacagctctccc
ctgccacaggctgctaccttccatcacaaccaggcgcagccaccaatgggctcacaacaa
ggttgggtgcaaggtgctggggctgatggactgcatttccttgatcagggagggaaaggt
agtacaagagctcagttttacaccatgtctgaaaaacttcacaaaagtgatgactcaatt
aaagtaattcccttgaccaccttcacttcaggtcagcaggccagaccctctagaagtgat
tcccccattatggaagaacatcccttgtaa
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