Dipodomys merriami (Merriam's kangaroo rat): 138840132
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Entry
138840132 CDS
T11079
Symbol
Col4a5
Name
(RefSeq) collagen alpha-5(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
dmer Dipodomys merriami (Merriam's kangaroo rat)
Pathway
dmer04151
PI3K-Akt signaling pathway
dmer04382
Cornified envelope formation
dmer04510
Focal adhesion
dmer04512
ECM-receptor interaction
dmer04820
Cytoskeleton in muscle cells
dmer04926
Relaxin signaling pathway
dmer04933
AGE-RAGE signaling pathway in diabetic complications
dmer04974
Protein digestion and absorption
dmer05146
Amoebiasis
dmer05165
Human papillomavirus infection
dmer05200
Pathways in cancer
dmer05222
Small cell lung cancer
Brite
KEGG Orthology (KO) [BR:
dmer00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
138840132 (Col4a5)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
138840132 (Col4a5)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
138840132 (Col4a5)
09142 Cell motility
04820 Cytoskeleton in muscle cells
138840132 (Col4a5)
09150 Organismal Systems
09152 Endocrine system
04926 Relaxin signaling pathway
138840132 (Col4a5)
09154 Digestive system
04974 Protein digestion and absorption
138840132 (Col4a5)
09158 Development and regeneration
04382 Cornified envelope formation
138840132 (Col4a5)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
138840132 (Col4a5)
09162 Cancer: specific types
05222 Small cell lung cancer
138840132 (Col4a5)
09172 Infectious disease: viral
05165 Human papillomavirus infection
138840132 (Col4a5)
09174 Infectious disease: parasitic
05146 Amoebiasis
138840132 (Col4a5)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
138840132 (Col4a5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
dmer04147
]
138840132 (Col4a5)
00536 Glycosaminoglycan binding proteins [BR:
dmer00536
]
138840132 (Col4a5)
Exosome [BR:
dmer04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
138840132 (Col4a5)
Glycosaminoglycan binding proteins [BR:
dmer00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
138840132 (Col4a5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
138840132
NCBI-ProteinID:
XP_069896035
LinkDB
All DBs
Position
Unknown
AA seq
1685 aa
AA seq
DB search
MKLRGVNLAAGLFLLALSLWGQPAEAAACYGCSPGSKCACSGVKGEKGEQGYPGVRGHPG
LPGFPGPEGPPGHQGQKGDDGIPGPPGPKGIRGSPGLPGFPGTPGLPGMPGHDGAPGPQG
IPGCNGTKGERGFPGSPGFPGLQGPPGPPGIPGMKGEPGSIIMSSLPGPKGNPGYPGRPG
IQGPAGPMGIPGPIGPPGPPGLMGPPGPPGLPGPKGNMGLNFQGPKGEKGEQGLQGPPGP
PGQISEQKRPIDVEFQKGDQGDPGDPGPPGPPGMCGPPGPPGGVKGEKGEQGEPGKRGKP
GKDGENGQPGIPGLPGDPGYPGEPGRDGQKGQKGDTGPPGPPGLVIPTPGTGVLVGEKGN
PGLPGLPGEKGERGFPGVQGPPGLPGPPGTAVTGPPGPPGFPGERGQKGDNGPPGISIPG
SPGLDGQPGAPGLPGPPGPPGPYIPIRDELCKAGPPGSPGSPGDKGFPGEQGVKGDKGDT
CFNCIGTGISGPPGQPGLPGLPGPPGSLGIPGQKGEKGHAGATGPKGLPGIPGAPGAPGF
PGSKGDPGDILTLPGMKGEKGELGSPGAPGLPGLPGTPGQDGLPGLPGPKGEPGGIAFKG
ERGPPGNPGLPGLPGNMGPMGPVGFGPPGPIGEKGVQGVPGNQGQPGIPGPKGDPGQTIT
QPGKPGLPGHPGRDGEVGLPGDPGLPGQPGFPGIPGSKGEPGSPGIGLPGPPGLKGFPGI
PGPPGAPGTPGRIGLEGPPGPPGIPGPKGEPGFGLPGPPGPPGLPGFKGTLGPKGDRGFP
GPPGSPGRTGLDGLPGPKGDIGPNGQPGPVGPPGLPGIGVQGPPGPPGIPGPIGQPGLHG
IPGEKGDPGPPGFDIPGPPGDRGSPGLPGAPGPIGPPGSPGLPGKAGASGFPGIKGEMGM
MGPPGPPGPLGIPGRSGVPGLKGDDGLQGEPGLPGPEGEKGGKGEPGLPGPPGPIDPSRL
GSKGEKGEPGLPGIPGLSGPKGYQGLPGDPGQPGLIGQPGLPGPPGPKGNPGLPGQPGLI
GPPGLKGNLGDMGFPGPQGVDGPPGPPGVPGQPGSPGLPGQKGDKGDPGVSGIGLPGLPG
PKGEPGLPGYPGNPGTKGSVGDIGFPGLPGTPGAKGQPGLPGFPGTPGTPGPKGIIGPPG
NPGLPGEPGPVGGGGHPGPPGPPGEKGKPGQDGIPGPAGQKGEPGQPGFGIPGPPGLPGL
SGQKGDGGSPGIPGNPGLPGPKGEPGFQGFPGVQGPPGPPGSPGPALEGPKGNPGPQGPP
GRPGLPGPEGPRGLPGNGGIKGEKGNPGPPGQPGLPGLKGDQGPPGLPGNPGRPGLNGMK
GDPGLPGVPGFPGMKGPIGIPGSTGLEGEPGLTGPPGPPGLPGPSGQSIIIKGDVGPPGV
PGPPGLKGPPGLPGPQGLPGATGPPGNPGRNGLPGFDGAGGRKGDPGVPGQPGSRGLDGP
PGPDGLQGPPGPPGSSSVAHGFLITRHSQTADAPQCPHGTIQIYEGFSLLYVQGNKRAHG
QDLGTAGSCLRRFSTMPFMFCNINNVCNFASRNDYSYWLSTPKPMPMNMEPLKGQSIEPF
ISRCAVCEAPAVVIAVHSQTIQIPHCPQGWESLWIGYSFMMHTSAGAEGSGQALASPGSC
LEEFRSAPFIECHGRGTCNYYANSYSFWLATVDVSDMFSKPQSETLKAGDLRTRISRCQV
CMKRT
NT seq
5058 nt
NT seq
+upstream
nt +downstream
nt
atgaaactgcgtggagtcaacttagctgccggcttgttcttactggccctgagtctttgg
ggacagccggcagaggctgcggcttgctatgggtgttctccaggatcaaagtgtgcctgt
agtggtgttaaaggggaaaagggagaacaaggatatccaggtgtaagaggccatccaggt
ttacctggatttccaggtccagaagggcctcctggacatcagggacaaaagggtgatgat
ggaattccagggccaccaggaccaaaaggaatcagaggatctcctggactacctggattt
ccagggacaccaggtcttcctggaatgccaggccatgatggagccccaggacctcaaggt
atccctggatgcaatggaaccaagggagaacgtggatttccaggcagtcccggttttcct
ggcttacagggacctccaggacctcctggtatcccaggtatgaagggggaaccagggagt
atcatcatgtcatcactgccaggaccaaaggggaacccaggatatccaggtcgtcctgga
atacaaggcccagctggccccatgggcataccagggccaattggccccccaggaccacca
ggtttgatgggccctcctggcccaccaggactgccaggaccaaaggggaatatgggttta
aacttccagggacccaaaggtgaaaagggtgagcaaggtcttcaggggccacctgggcca
cctgggcaaatcagtgagcagaaaagaccaattgatgtggagtttcaaaaaggagatcag
ggagatcctggtgacccaggaccacctggacctccggggatgtgtggccctcctggccct
cctggtggtgtgaaaggtgagaagggtgagcaaggagagccaggcaaaagaggtaaacca
ggcaaagatggagagaatggtcaaccaggaattccaggtttgcctggtgatcctggatac
cctggggaaccaggaagggatggtcaaaagggccaaaagggtgacactggtccacctggg
cctcctggactggtaattcctacacctggtactggtgtgcttgtgggagaaaaaggaaat
cctgggttgcctggcttgcctggagaaaaaggagaaagaggatttcctggagtacagggt
ccacctggccttcctggacctccagggactgcagttacaggtcctcctggtccccctggt
tttcctggagaaagaggccagaaaggtgataacggtccacctggtatttcgattcctgga
tctcctggacttgatggacaacctggggctcctggccttccagggcctcctggccctcct
ggcccctatatcccaattcgtgatgaactatgtaaagcaggcccaccaggctccccagga
tctccaggtgataaaggatttccaggagaacaaggagtaaaaggtgataaaggagacacc
tgcttcaactgtattggaactggtatatcgggacctccaggacaacctggtttgccaggt
ctcccaggtcctccaggatctcttggcattcctggacagaagggtgaaaagggacatgca
ggagcaactggtccgaaaggattgccaggcataccaggagcaccaggtgctccaggcttt
cctggatctaaaggtgatcctggtgacatcctcactcttccgggaatgaagggtgaaaag
ggagagctgggatcccctggagctccagggcttccaggtttacctggcactccaggacag
gatggattgccagggcttcctgggcccaaaggagagcctggtggaattgcttttaagggt
gaaagaggtccccctggaaatccaggcttgccgggtctcccagggaatatgggccctatg
ggcccagttggttttggccctccaggcccaataggtgaaaaaggcgtgcaaggtgttcca
ggaaatcaaggccaaccaggaattccaggtcctaaaggtgatccaggtcagaccataacc
cagccaggaaagcctggcctgcctggtcatccaggtagagatggtgaagtaggtcttcca
ggtgaccctggacttccaggccaaccaggattcccaggaatacctggtagcaaaggagaa
ccaggtagccctggaattgggcttcctggaccacctggtctcaaaggttttccaggaatt
ccaggacctcccggagctcctgggacacctggaagaattggtttagaaggccctcctggg
ccaccaggcattccaggaccaaagggagagccaggatttgggctacctggaccacctggg
ccaccaggactcccaggtttcaaaggaacacttggtccaaaaggtgatcgtggttttcca
ggacctccaggttctcccggacgcactggcttggatggcctacctggaccaaaaggtgat
attggaccaaatggacaacctgggccagtaggacctcctgggctgccaggaattggtgtt
cagggaccaccaggaccaccaggaattcctggaccaataggccagcctggcttacatgga
atacctggagagaagggagatccaggacctcctgggtttgatattccaggtcctcctggt
gatagaggcagtccagggctccctggagctcctggccctataggacctccaggatcacca
ggcctcccaggaaaagcaggtgcctctggatttccaggtattaaaggagaaatgggtatg
atgggacctccaggcccaccaggacctttgggaattcccggtaggagtggtgttcctggc
cttaaaggtgatgatggcttgcagggtgagccaggacttcctggccctgaaggagaaaaa
ggtggaaaaggagagcctgggcttccaggcccccctggaccaatagatccaagtcgcttg
ggctccaaaggagagaagggggaacctggtttaccaggtattcctggactttctgggcca
aaaggctaccagggattgcctggagacccagggcaaccaggactgattggacaacctgga
ttaccaggacctccaggtcccaagggtaaccctggtctccccggccagccaggacttata
ggacctcctggacttaaaggaaatcttggtgatatgggtttcccaggccctcagggtgtg
gatgggccccctgggcctcctggagttcctggacagcctggctctccaggattacctgga
cagaaaggagataaaggtgatcctggtgtttcaggaattggtcttccaggtcttcctggc
cctaagggtgaacctggtctgcctggatacccagggaacccaggtactaaaggatctgtg
ggagatattggctttcctggattaccagggacacctggagctaaagggcagccaggactg
cctggattcccaggaaccccaggcactcctggaccaaagggtattattggtcctcctggg
aaccctggtcttcccggagaacctggtcctgtaggtggtggaggccacccggggccacca
ggacctccaggtgaaaaaggcaaaccaggtcaagatgggattcctggaccagcaggacag
aagggtgaaccaggtcaaccaggctttggaatcccaggaccccctggacttccaggactt
tctggtcagaagggtgatggaggatcacctggcattccaggaaatcctggccttccaggt
ccaaaaggtgaaccaggctttcagggttttcctggtgtgcagggtccccctggcccacct
ggttctcctggtccagctctggaaggtcctaaaggcaaccctgggccccaaggtcctcca
ggaagaccaggtctaccaggtccagaaggtccacggggtctccctggaaatggaggtatt
aaaggagagaagggaaacccaggcccacctgggcaacctggcttgcctggcttgaaagga
gatcaaggaccaccaggactcccgggtaaccctggccgaccaggtctcaatggaatgaaa
ggagatcctggactccctggtgttccaggattcccaggcatgaaaggacctattggaata
cctggttcaactggtcttgagggtgaaccaggacttactggcccaccaggtcctcctggg
ttacctggtccttcaggacagagtattataatcaaaggagatgttggtcctccaggggtt
cctggtccacccgggttaaaaggtccaccaggattaccaggccctcaaggtttaccaggt
gctactggcccaccaggaaatcctggacgtaatggactccctggttttgatggtgctgga
gggcgcaaaggagacccaggtgtgccaggacagcccggttcccggggtttggatggtccc
ccagggccagatggactgcaaggtcctccaggtccccctggaagttcttctgttgcccat
ggattcctcatcacacgccacagccagacagcagatgcaccacaatgcccacatggaacg
atccagatctatgaaggcttttctctcttgtatgtgcaaggaaacaaaagagcccacggc
caagatttgggaactgctggcagctgccttcgtcgattcagtaccatgcctttcatgttc
tgcaatatcaataatgtttgcaactttgcttcaagaaatgactactcttactggctctcc
accccaaaacctatgccaatgaacatggaaccactgaaaggccagagtatcgagccattt
attagtagatgtgcagtatgtgaagctccagctgtggtgattgcagttcacagtcagacc
atccagattccccactgtcctcaaggatgggaatctctgtggatcggttattcctttatg
atgcatacaagtgcaggggcagagggctcaggacaagccttggcctctcctggttcttgt
ttggaagagttccgttctgctcctttcatcgaatgtcatgggcgaggaacttgtaattac
tatgccaactcctatagcttttggctggcaactgtagatgtgtcagatatgttcagtaaa
cctcagtcagaaacactgaaagcaggagacttgaggacacgtattagccggtgtcaagtg
tgcatgaagaggacatag
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integrated database retrieval system
