Dipodomys merriami (Merriam's kangaroo rat): 138840362
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Entry
138840362 CDS
T11079
Symbol
Hdac6
Name
(RefSeq) histone deacetylase 6 isoform X1
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
dmer Dipodomys merriami (Merriam's kangaroo rat)
Pathway
dmer04613
Neutrophil extracellular trap formation
dmer05014
Amyotrophic lateral sclerosis
dmer05034
Alcoholism
dmer05203
Viral carcinogenesis
Brite
KEGG Orthology (KO) [BR:
dmer00001
]
09150 Organismal Systems
09151 Immune system
04613 Neutrophil extracellular trap formation
138840362 (Hdac6)
09160 Human Diseases
09161 Cancer: overview
05203 Viral carcinogenesis
138840362 (Hdac6)
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
138840362 (Hdac6)
09165 Substance dependence
05034 Alcoholism
138840362 (Hdac6)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
dmer01009
]
138840362 (Hdac6)
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dmer03019
]
138840362 (Hdac6)
04131 Membrane trafficking [BR:
dmer04131
]
138840362 (Hdac6)
03036 Chromosome and associated proteins [BR:
dmer03036
]
138840362 (Hdac6)
Enzymes [BR:
dmer01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
138840362 (Hdac6)
Protein phosphatases and associated proteins [BR:
dmer01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
138840362 (Hdac6)
Messenger RNA biogenesis [BR:
dmer03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
138840362 (Hdac6)
Membrane trafficking [BR:
dmer04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
138840362 (Hdac6)
Chromosome and associated proteins [BR:
dmer03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
138840362 (Hdac6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Hist_deacetyl
zf-UBP
zf-UBP_var
Motif
Other DBs
NCBI-GeneID:
138840362
NCBI-ProteinID:
XP_069896603
LinkDB
All DBs
Position
Unknown
AA seq
1441 aa
AA seq
DB search
MERKICVTRGSLSRREVGVTNQARRRGLRASRVRARISPAMTSTCQDSTASRQRKGRQNP
QSPSHDVNAITKRTVKKGAVPRCTPNLSEIKKKGKMKKLSQPVEEDLVMGLQGLDLNPEV
KVMIGTGLVFDEQLNDFHCLWDDSYPENPERLHAIKEQLIQEGLVDRCICFPARVAEKEE
LMLVHSPEYIDLMETTQYMNEGELRILASTYDSVYLHPNSFICACLASGSVLRLVDAVLG
AEIRNGMAIIRPPGHHAQRDLMGGYCMFNHVAVAARYAQRKHHIKRVLIVDWDVHHGQGT
QFMFDQDPSVLYFSIHRYEQGRFWPHLQASNWSAIGCGQGQGYNINIPWNQVGMRDADYI
AAFLHILLPVASEFQPQLVLVAAGFDALQGDPKGEMAATPAGFAQLTHLLMGMAGGKLIL
SLEGGYNLQSLARGVSASLHTLLGDPCPMLESPGAPCQSAQASVSCTLEALEPFWEVLVN
TVDSTEEDNEAGDNWDERQEEGEGPLGATSLPVLTWPTLQHRTGLVYDQRMMSHCNLWDN
HHPETPQRILRIMCHLEELGLAARCLHLPVRPATDAELLTCHSAQYVERLRATETMKTRE
LHREGANFDSIYICPSTFTCAQLATGAVCRLVEAVLSGEVLNGIALVRPPGHHAEHDAAC
GFCFFNSVAVAARHAQAIRGTALRILIVDWDIHHGNGTQHIFENDPSVLYMSLHRYDRGT
FFPMGDEGSSKHVGLAEGMGFTVNVAWNGPRMGDADYLAAWHRLVLPIAYEFNPELVLVS
AGFDAAQGDPLGGCQVSPECYAHLTHQLMGLANGHTILILEGGYNLTSISESMAACTHSL
LGDPPPLLSMLRPPQPGALASITETIQAHRKYWRSLRVLKVEDKDSPCTSKPIARKASHP
THLRLAKGVTMPEGKGVKASMRKVTSASSAKAPTAAHTKVKTAKVTTCTQNKAQRDSWKS
KLTWDTSENTVGGAMVVQAIFENSVGGTKMNQATSNETVGEAMMDPITFEETDGEGAVVD
KVICEKTEGTKVDQATSEDTVGGDTVDEATSKETVGGDMVDQSTSEETVGGDMVDQSTSE
ETVGGDMVDQATSEIVGGAKVDQAPSKEIVGGDMVDQATSEETMGGAKVDQATSKETMGG
DMVDQVTCKETVGGAKVDKVTCKETMGGAKVDEVTCKETVGGAKVDKVTCKETVGGAKVD
EVTSKETVGEATSEATGEVILDQTNSEDALGGAKLIQTPLDSDRDKQISLQQGTTFQLSP
IQQIGNPRILEPGNEAQRALEDEDPEDEGLLGEAAGGEPINNSQLAFGSGEAAAAVATIT
VAPDNDEDLFYAVTPMPWCPHLGAVCPIPAAGLNVNQPCDACGTMEENWVCLSCYKVYCS
RYINGHMVSHYEASQHPLVLSCVDLSSWCYHCEAYVHHQDVLHVKTVAHKNKFGEDMPSP
N
NT seq
4326 nt
NT seq
+upstream
nt +downstream
nt
atggaaagaaagatatgtgtcacccggggctccctgagtcgcagggaggttggcgtcacg
aatcaggcacggcgaaggggattgcgcgctagtcgcgtcagggcccgaatctccccagct
atgacttccacttgccaggattccacagcctccaggcagcggaagggtaggcagaatccc
caatcgccttctcacgatgtgaacgccatcacgaagagaactgttaagaagggtgctgtg
ccccgctgtactcccaatctatcggagataaagaagaaaggaaagatgaagaagcttagc
caaccagttgaagaagacctagtcatggggctgcaagggctggatcttaaccctgaagtg
aaggtaatgattggtactggcttggtgtttgatgaacagctaaatgattttcattgcctc
tgggatgacagctaccctgaaaaccctgaaagactccatgccattaaggagcagcttatc
caggaaggccttgtggatcgttgtatatgctttccggcccgggtcgcagaaaaggaagag
ctcatgttggttcacagcccagagtacattgacctcatggagacaacccagtacatgaat
gagggagaacttcgcatactggcaagcacctatgattcagtttatctacatccgaactct
tttatttgtgcctgtctggcctcaggctctgtccttagactagtagatgcggtcctggga
gctgaaatccggaatggcatggctatcatcagacctccaggacaccatgctcagcgtgat
ctgatgggtgggtattgcatgttcaaccatgtagctgtagctgctcgttatgctcaaagg
aagcaccacattaagagggtccttattgtggactgggacgttcatcatggccaaggaaca
cagttcatgtttgaccaggatcccagtgttttatacttctccatccaccgctatgagcag
ggtcggttctggccccacctccaggcctctaactggtctgccataggttgtggccaaggg
caaggatacaacatcaatataccttggaatcaggtggggatgcgggatgcggactacatt
gctgcttttcttcacatcctgttgcctgttgcttctgagtttcagcctcaactggtcctg
gtagctgctggatttgatgccctccaaggggaccccaagggcgagatggctgccacccct
gcagggtttgcccagttaacccatctgctcatgggtatggcaggaggcaagctaattctg
tctctggaaggtggatacaacctccagtctctggctaggggtgtcagtgcatctctccat
acccttctgggagacccttgccctatgctagaatcccctggtgcaccatgtcaaagtgct
caggcttcggtctcctgtactctggaagccctggaaccattctgggaagtccttgtgaat
acagttgatagtacggaggaggacaatgaggctggagacaactgggacgagagacaagag
gaaggggaaggacccttgggggccacttcactgccagtcctgacatggcccacgctacag
catcgtacaggattggtctatgaccaaagaatgatgagtcactgcaacctgtgggacaac
caccaccctgagacaccccagcgtattttgcggatcatgtgccacttggaggaactaggg
cttgcagcacgctgtctccacctgcctgtgcggcctgccactgatgccgagctccttacc
tgccacagtgcccagtatgtggagcgtctccgggctacagagacaatgaaaacccgggaa
ctgcaccgcgagggtgccaactttgactccatctacatctgccccagcacattcacctgt
gctcagctagctacaggtgctgtctgccgcctggtggaagctgtactatcaggagaggtt
ttaaacggcattgctctggtgcgcccccctggacaccatgcagagcacgatgctgcttgt
ggcttctgtttttttaattctgtggctgtggctgctcgccatgcccaagccattaggggg
actgccttaaggatcctaattgtggattgggacatccatcatgggaatggaactcagcac
atctttgagaatgaccccagtgtgctttatatgtccctgcaccgctatgatcgtggcact
ttcttccccatgggggatgaggggtccagcaaacacgtaggtctggctgagggcatgggc
ttcactgtcaatgtggcctggaatgggccccgtatgggtgatgctgactacctggctgca
tggcatcgacttgtgcttccaattgcatatgagtttaacccagaactggtgcttgtatct
gctggttttgatgctgcacagggtgacccactgggtggctgccaggtgtcaccggaatgt
tatgcccatctcactcaccagctgatgggccttgccaatggccacactatccttatccta
gagggtggctacaacctgacatccatctcagagtcaatggctgcctgtacccattccctc
cttggagatccgccacccctgttatcgatgcttcggccaccacaaccaggggcccttgcc
tcaattacggagaccatccaagcccatcgcaaatactggcgcagcctgagggtcctgaag
gtagaagacaaggattcaccctgcacttccaaacccatcgccaggaaggcatcccatcca
acccatcttaggttggctaagggggtaaccatgccagaagggaagggtgtaaaagcaagc
atgaggaaagttacctcagcatcatctgcaaaagcacctactgcagctcacaccaaagtg
aagacagccaaagtgaccacatgtactcaaaacaaggctcagagagatagttggaaatca
aaactaacctgggacacttctgagaacactgtgggaggagccatggtggtccaggccatc
ttcgagaatagtgttggaggaaccaagatgaaccaagcgacctccaatgagactgttgga
gaagccatgatggacccgatcacctttgaggagactgatggagaaggagccgtggtggac
aaggtcatctgtgagaagactgaaggaaccaaggtagaccaagccacctctgaggacact
gtgggaggagacacggtggatgaggccacttccaaggagactgtgggaggagacatggtg
gaccaatccacctcagaggagactgtgggaggagacatggtggaccaatccacctcagag
gagactgtgggaggagacatggtggaccaggccacctctgagattgtgggaggagccaag
gtggaccaggccccctccaaggagattgtggggggagacatggtggatcaggccacctct
gaggaaacaatgggaggtgccaaggtggaccaggccacctccaaggagactatgggagga
gacatggtggatcaggtcacctgcaaggagaccgtgggaggagccaaggtggacaaggtc
acctgcaaggagaccatgggaggagccaaggtggacgaggtcacctgcaaggagaccgtg
ggaggagccaaggtggacaaggtcacctgcaaagagaccgtgggaggagccaaggtggac
gaggtcacctccaaagaaactgtaggagaagccacctcagaggctacaggggaagtcata
ctagaccagaccaactcagaggatgctctgggaggagccaagctgatccaaactcctcta
gactcagacagagataagcagatctcacttcagcagggaaccacattccagctatccccc
attcagcagattgggaatcccagaattttagaaccaggcaatgaagctcagagagccctg
gaagatgaagacccagaagatgaaggcctactgggagaagcagctggaggtgagcctatt
aataactctcagctggcatttggatctggggaagctgctgctgctgttgctactattact
gttgctcctgacaatgatgaggacttattttatgctgtaacaccaatgccttggtgcccc
catttgggggcagtgtgccccatacctgcagcaggactgaacgtaaaccaaccttgtgat
gcctgtggaactatggaggagaactgggtgtgtcttagttgctataaggtctactgcagt
cgttatataaatggtcacatggtcagccattatgaagcttctcaacacccattagtcctc
agctgtgtagacctctcttcctggtgttaccattgtgaggcctatgtccaccaccaggat
gtcctccatgtgaagactgtggctcacaagaacaaatttggagaggacatgccctccccc
aattaa
DBGET
integrated database retrieval system
