Dipodomys merriami (Merriam's kangaroo rat): 138840399
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Entry
138840399 CDS
T11079
Symbol
Prpf40b
Name
(RefSeq) pre-mRNA-processing factor 40 homolog B isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
dmer Dipodomys merriami (Merriam's kangaroo rat)
Pathway
dmer03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dmer00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
138840399 (Prpf40b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dmer03041
]
138840399 (Prpf40b)
Spliceosome [BR:
dmer03041
]
Complex A
U1 snRNP components
U1 related factors
138840399 (Prpf40b)
Complex B
138840399 (Prpf40b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
DUF4936
WW_2
RhoGAP-FF1
Motif
Other DBs
NCBI-GeneID:
138840399
NCBI-ProteinID:
XP_069896711
LinkDB
All DBs
Position
Unknown
AA seq
889 aa
AA seq
DB search
MSVPDSGPRPPAAPAPFPPGPPMMPPPFMPPPGIPPPFPPMGLPPMSQRPPAIPPMPPGI
LPPMLPPMGAPPPLTQIPGMVPPMMPGMLMPAVPVTAATAPGADTASSAVAGTGPLRALW
SEHVAPDGRIYYYNADDKQSVWEKPSVLKSKAELLLSQCPWKEYKSDTGKPYYYNNQSQE
SRWTRPKDLDDLEALVSQEAAGKQQQSQTLQPQPPQSQPDPPPVPPGPTTVSTGFLEPEP
GGSEDCGISEAAQPLEQGFLQQPEEGPSSSTGQHQEEEESKPEPERSGLSWSNREKAKQA
FKELLRDKAVPSNASWEQAMKMVVTDPRYSALPKLSEKKQAFNAYKAQREKEEKEEARLR
AKEAKQTLQHFLEQHERMTSTTRYRRAEQTFGELEVWAVVPERDRKEVYDDVLFFLAKKE
KEQAKQLRRRNIQALKSILDGMSSVNFQTTWSQAQQYLMDNPSFAQDQQLQNMDKEDALV
CFEEHIRALEREEEEERERARLRERRQQRKNREAFQTFLDELHETGQLHSMSTWMELYPA
VSTDVRFANMLGQPGSTPLDLFKFYVEELKARFHDEKKIIKDILKDRGFCVEVNTAFEDF
AHVISFDKRAAALDAGNIKLTFNSLLEKAEAREREREKEEARRMRRREAAFRSMLRQAVP
ALELGTAWEEVRERFVCDSAFEQITLESERIRLFREFLQVLEQTECQHLHTKGRKHSRKG
KKHHRKRSHSPSGSESEEEELPPPSLRPPKRRRRNPSESGSEPSSSLDSVESGGATLGGR
GSPSSHLLGSEHGLRKAKKPKKKTKKRRHKSNSPESETEPEEKPGKESEEKEQEQAKDME
LRQAELPNRSPGFGVKKEKTGWDTSESELSEGELERRRRTLLQQLDDHQ
NT seq
2670 nt
NT seq
+upstream
nt +downstream
nt
atgtcggttcccgattctggtccccggcccccagcagcgcctgcccccttcccaccgggg
ccccccatgatgccaccacccttcatgccccctccagggattccccctccctttcctccg
atggggctccctcctatgagtcagagaccaccagcgattccccccatgccaccaggcatt
ctgcccccaatgcttccgcccatgggggcaccaccaccactcacacagataccaggaatg
gtacctccaatgatgccaggaatgctgatgccagcagtgcccgtcaccgcagcgacggct
ccgggtgcggacaccgccagctctgctgtggctggaacaggccctctgagggccctatgg
agtgagcatgtggcccctgatgggcgcatctactactacaatgctgacgacaagcagtcc
gtgtgggagaagcccagcgtgctcaagtccaaggcagagctgctgctgtcccagtgcccc
tggaaagagtacaagtcggacacaggcaagccttactactacaacaaccagagtcaggag
tcccggtggacccgccctaaggacctggatgacctggaggctctagtcagtcaagaggct
gctgggaaacagcaacagtcacagacactccagccacagcctcctcagtcacagcctgat
cccccgcctgtacctccgggtcccaccacagtgtccacaggctttctggaacctgagcca
ggtgggagtgaagactgtggtatatcagaggctgcccagccactggagcagggcttcctg
cagcagccagaggagggtcccagcagttctactggacagcatcaggaggaagaagaatcc
aagccagaaccagagaggtctggcctcagttggagcaaccgggagaaggcaaagcaggca
ttcaaggagctgctgagggacaaggctgtcccctccaatgcctcgtgggaacaggccatg
aagatggtggtcactgaccctcgttacagtgccttgcctaaactgagtgagaaaaagcag
gcattcaatgcctacaaggcacagcgggaaaaggaggagaaggaagaggctcggctcagg
gccaaggaagccaagcagacccttcagcatttcctggagcaacatgaacgcatgacctcc
accacacgctaccggcgggcagaacagacctttggggagctggaggtctgggctgtggtt
cctgaaagggatcgaaaagaggtttatgatgatgtcctcttcttcctggccaagaaggag
aaggaacaggccaagcagctccggcgccgcaacatccaggccctgaagagcatcttggat
gggatgagtagcgtcaacttccaaaccacatggtcccaggcccagcagtacctcatggat
aaccccagttttgctcaggaccagcagctgcagaatatggataaggaagatgccctggtc
tgctttgaggagcacatccgagccttagagagggaggaagaggaagagcgggagcgggcc
cggcttcgggagcggcgccagcagcgcaagaaccgggaggccttccagaccttcctggac
gagctgcacgagacagggcagctacactccatgtctacctggatggagttgtacccagca
gtcagcactgatgtccgctttgccaacatgctgggccagccgggctccacccctctggac
ttattcaagttttatgtggaggaattgaaggcacgattccatgatgagaagaagatcatt
aaagacattcttaaggaccggggcttctgtgtggaggtgaacacagcctttgaggacttc
gcccacgtcataagctttgacaagagggctgctgcgctggacgcaggcaacatcaagctg
accttcaacagtctgctggagaaggcagaggcccgggagagggagcgggaaaaggaggag
gcacggaggatgcggcgcagggaggctgcctttcgaagcatgctgaggcaggccgtgcct
gctctggagctgggcactgcgtgggaagaggtccgtgagcgctttgtgtgcgactcagcc
tttgagcagatcaccctggagtcggagaggatccggctcttccgggagttcctgcaggtg
ctggagcagaccgaatgccagcacctccataccaaaggccgaaagcacagcaggaagggc
aagaagcaccatcggaagcgctcgcactcgccttcaggctctgagtcagaagaggaggag
ctgcccccaccatccctccgaccccccaagcgaaggcggcggaacccctcagagtcaggc
tctgagccctcatcatcacttgattcagttgaaagtgggggtgctacccttggaggacgg
ggatccccatcctcccacctccttggatcagagcatggccttcggaaagccaagaaacca
aaaaagaaaactaagaagagaagacacaagtcgaacagtcctgagagtgagacagagccc
gaggagaagcctggcaaagagagtgaagaaaaagaacaggaacaggctaaggacatggag
ctccggcaggcagaactccctaaccgctccccaggcttcggagtcaagaaggagaagaca
ggctgggacacatcagaaagtgagctgagtgagggagagctggagaggcgccggcggaca
ctcctgcagcagctagatgaccaccagtga
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integrated database retrieval system
