Dipodomys merriami (Merriam's kangaroo rat): 138841909
Help
Entry
138841909 CDS
T11079
Symbol
Smarcc2
Name
(RefSeq) SWI/SNF complex subunit SMARCC2 isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
dmer Dipodomys merriami (Merriam's kangaroo rat)
Pathway
dmer03082
ATP-dependent chromatin remodeling
dmer04714
Thermogenesis
dmer05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
dmer00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
138841909 (Smarcc2)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
138841909 (Smarcc2)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
138841909 (Smarcc2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dmer03021
]
138841909 (Smarcc2)
03036 Chromosome and associated proteins [BR:
dmer03036
]
138841909 (Smarcc2)
Transcription machinery [BR:
dmer03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
138841909 (Smarcc2)
Chromosome and associated proteins [BR:
dmer03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
138841909 (Smarcc2)
PBAF complex
138841909 (Smarcc2)
GBAF(ncBAF) complex
138841909 (Smarcc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
Chromo
Motif
Other DBs
NCBI-GeneID:
138841909
NCBI-ProteinID:
XP_069898982
LinkDB
All DBs
Position
Unknown
AA seq
1243 aa
AA seq
DB search
MAVRKKDGGPNVKYYEAADTVTQFDNVRLWLGKNYKKYIQAEPPTNKSLSSLVVQLLQFQ
EEVFGKHVSNAPLTKLPIKCFLDFKAGGSLCHILAAAYKFKSDQGWRRYDFQNPSRMDRN
VEMFMTIEKSLVQNNCLSRPNIFLCPEIEPKLLGKLKDIIKRHQGTVTEDKNNASHVVHP
VPGNLEEEEWVRPVMKRDKQVLLHWGYYPDSYDTWIPASEIEASVEDAPTPEKPRKVHAK
WILDTDTFNEWMNEEDYEVNDDKNPVSRRKKISAKTLTDEVNSPDSDRRDKKGGNYKKRK
RSPSPSPTPEAKKKNAKKGPSTPYTKSKRGHREEEQEDLTKDMDEPSPVPNVEEVTLPKT
VNTKKDSESAPVKGGTMTDLDEQEDESMETTGKDEDESSTGNKGEQTKNPDLHEDNVTEQ
THHIIIPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEY
LTSTACRRNLAGDVCAIMRVHAFLEQWGLINYQVDAESRPTPMGPPPTSHFHVLADTPSG
LVPLQPKTPQGRQVDADTKAGRKGKELDDLVPETAKGKPELQSSASQQMLNFPDKGKEKP
TDMQNFGLRTDMYTKKNVPSKSKAAASATREWTEQETLLLLEALEMYKDDWNKVSEHVGS
RTQDECILHFLRLPIEDPYLEDSEASLGPLAYQPIPFSQSGNPVMSTVAFLASVVDPRVA
SAAAKSALEEFSKMKEEVPTALVEAHVRKVEEAAKVTGKADPAFGLESSGIAGTTSDEPE
RIEESGTDEARVENQAADEKKEPKEPREGGGAVEEEAKEKTSEAPKKDEEKGKEGDSEKE
SEKSDGEPIVDPEKEKEPKEGQEEVLKEVESEGERKTKVERDIGEGNLSTAAAAALAAAA
VKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREREALEYQRQQLLAD
RQAFHMEQLKYAEMRARQQHFQQMHQQQQQPPPNLPPGSQAIPPTGAAGPPSVHGLAVAP
ASLAPAPAGSGAPPGSLGPSEQMGQTGSTTGPQQPQPAGGPQPGAVPPGVPPPVPHGPSP
FPNQQTPPSMMPGAVPGSGHPGVAGNAPLGLPFGMPPPPPPAPSVIPFGSLADSISINLP
PPPNLHGHHHHLPFAPGTLPPPNLPVSMANPLHPNLPATTTMPSSLPLGPGLGSAAAQSP
AIVAAVQGNLLPSASPLPDPGTPLPPDPTAPSPGTVTPVPPPQ
NT seq
3732 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcggaagaaggacggcggccccaacgtgaagtactacgaggccgcggacacc
gtgacccagttcgacaacgtgcggctctggctgggtaaaaactacaagaagtatatacaa
gctgaaccaccaaccaacaagtctctgtctagcctggttgtacagttgctacaatttcag
gaagaagtttttggcaaacatgtcagcaatgcaccgctcactaaactgcctatcaaatgt
ttcctagatttcaaggcaggaggctccttgtgccacattcttgcagctgcctacaaattc
aagagtgaccagggatggagacgttacgatttccaaaacccatcacgcatggaccgcaat
gtggaaatgttcatgaccattgaaaaatcactggttcagaataattgcctgtctcgacct
aacatttttttgtgcccagaaattgagcccaaactgctagggaaattaaaggatattatc
aagagacaccagggaacagtcactgaggataagaataatgcctcccatgttgtgcatcct
gtcccagggaacctagaagaagaagaatgggtacgaccagtcatgaagagggataaacaa
gttcttctgcactggggctactatcctgacagttatgatacttggatccccgccagtgaa
attgaagcttctgtagaagatgctcctactcctgagaagcctaggaaggttcatgccaaa
tggattctagacacagataccttcaatgaatggatgaatgaggaagactatgaagtaaat
gatgacaaaaaccctgtctcccgccgaaagaagatttcagctaagacattgacagatgag
gtaaacagcccagattctgatcgacgggacaagaagggggggaattataagaagaggaag
cgctccccttctccctccccaaccccagaagctaagaagaagaatgctaagaaaggtcct
tcaacaccttataccaagtcaaagcgtggccacagagaagaggaacaagaagacctgaca
aaggacatggacgagccctctccagttcccaatgtagaagaggtgacactacccaagaca
gtcaacactaagaaggattcagagtcagctccagtcaaaggaggcaccatgactgacctg
gatgaacaggaggatgaaagcatggagaccacgggcaaggatgaggatgaaagcagtacg
gggaacaagggggaacagaccaagaatccagacttgcatgaggacaatgtgactgagcag
acccaccacatcatcattcccagctacgctgcctggtttgactacaacagtgttcatgcc
attgaacggagggctctccctgaattctttaatggcaagaacaagtccaagactccagag
atctacctagcctatcgaaactttatgatcgacacttaccgactgaacccccaggagtat
ctcacctctactgcctgccgccggaacctggcgggtgatgtgtgtgccataatgagggtc
catgccttcctggagcagtggggtcttattaactaccaagtggatgctgagagtcgacca
accccaatggggcctcctcccacctctcacttccatgtcttggcagatacaccatcaggg
ctggttcctctgcagcccaagaccccacagggccgccaggttgatgctgataccaaggct
gggcggaagggcaaagagctggatgacctggtgccagagacggctaagggcaagccagag
ctgcagagctctgcttcccagcaaatgctcaactttcctgacaaaggcaaagagaaacca
acagacatgcaaaactttgggcttcgaacagacatgtacacaaagaagaatgtaccctcc
aagagcaaagctgcagccagtgccactcgagaatggacagaacaggagaccctgctactc
ctggaggccctggaaatgtacaaggatgactggaacaaagtgtctgagcatgtgggaagt
cgcacccaggacgaatgcatcttgcattttcttcggcttcctattgaagacccatatctg
gaggactcagaggcctccctgggacccctggcctaccagcccatccccttcagtcagtcg
ggcaatcctgttatgagcactgttgcctttctggcatctgtcgtcgatccccgagtggcc
tctgctgctgcgaagtcagccctagaggagttctcaaaaatgaaagaagaagtccccaca
gccttagtggaggcccatgttcggaaagtagaagaagcagccaaggtgacgggcaaggca
gatccagcctttggtctagaaagcagtggcattgcaggaaccacatctgatgagcctgag
cgcattgaggaaagtgggactgatgaggcacgggtggagaaccaggctgcagatgagaag
aaggagcccaaggaaccccgagaaggaggaggggctgtagaagaggaagctaaggaaaaa
acaagtgaggctcccaagaaagacgaagagaaaggaaaagaaggtgacagcgagaaggag
tcagaaaagagtgatggggaaccaatagttgatcctgaaaaggagaaagagccaaaggaa
gggcaggaggaagtgttgaaggaagtggagtcagagggagagaggaagacgaaggtggag
cgggacattggtgaaggcaacctctccactgctgctgctgctgccctagctgctgctgca
gttaaggcgaagcacttggctgctgttgaggagaggaaaatcaaatctttggtagccctg
ttggtggagacccagatgaaaaagttggagatcaaactgcgacactttgaggagctggaa
actatcatggaccgggagcgagaagcactcgagtatcaaaggcagcagctcctggccgac
agacaagcctttcacatggagcagctgaagtatgctgagatgagggcccggcagcagcac
ttccaacagatgcatcagcagcagcagcagccaccaccaaacctgcccccaggctcccag
gccatacccccaacaggggctgctgggccaccctcagtgcatggtctggctgtggctcca
gcctctttagcccctgctcctgctggcagtggggcccctcctggaagcttgggcccttct
gaacagatggggcagacagggtcaactacagggccacagcagccacaaccagctggaggc
ccccagcctggggcagtcccaccaggggtccccccccctgtaccccatggcccctcaccg
ttccccaaccaacaaactcctccctcaatgatgccaggggcagtgccaggcagcgggcac
ccaggcgtggcgggtaatgctcctttgggtttgccttttggcatgccgcctcctcctcct
cctgctccatccgtcatcccatttggtagtctagctgactccatcagtattaaccttccc
cctcctcctaacctgcatgggcatcaccaccatctcccgtttgccccgggcactctcccc
ccacctaacctgcctgtgtccatggcgaaccctctacatcctaacctgccggcgaccacc
accatgccatcttccttgcctcttgggccggggctcggatccgccgcagcccagagccct
gccattgtggcagctgttcagggcaacctcctgcccagtgccagcccactgccagaccca
ggcacccctctgcctccagaccccacagccccgagcccaggcacagtcacccctgtgcca
cctccacagtga
DBGET
integrated database retrieval system
