Dehalococcoides mccartyi GY50: GY50_0196
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Entry
GY50_0196 CDS
T02938
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
dmg
Dehalococcoides mccartyi GY50
Pathway
dmg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dmg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GY50_0196 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dmg03019
]
GY50_0196 (deaD)
Enzymes [BR:
dmg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GY50_0196 (deaD)
Messenger RNA biogenesis [BR:
dmg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GY50_0196 (deaD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
AHB12981
LinkDB
All DBs
Position
179783..181468
Genome browser
AA seq
561 aa
AA seq
DB search
MSFESFNFAPAVMAGVRACGYKEPTPIQAQAIPPIMEGHDVIGLAQTGTGKTAAYALPII
QKMLSTPRGRVRTLVIAPTRELACQISDSFRSLGQRARIRECSIYGGVNMDQQIRRLRSG
VDVVVACPGRLLDHIWRGTIDVCGVETLIIDEADRMFDMGFQPDIQSILKCLVQPHQTLL
FSATMPPEVRKLTQESQTNPVTIQVGTQAPASSVSHSVYPVKSHQKTPLLIEILKTTETK
SVLIFARTKYGAENLADEISKAGFTTASLQGNLSQNRRHAVMEGFRRGNFKILVATDIAA
RGLDIDHISHVINYDMPDTPEDYTHRIGRTGRFDRTGQALSLVTGRDGDMVRDIQRLLSS
PIQRLRVDGFDYATTRNDGQHQSQRRDFAPRRGYSSGGYNHPEMSVNEALQTDTPAEMPL
SPARPYNAGFRPGRPSNSAPRFRREGNLAPRIQRQSSFEDSPAPAPRPEARFNDRPSYRK
ENSFPVSEQVRPAFKKETGFTPREHNPADFENHEQPSGRRPARFNGKVSFADRPARPGNK
VGKPPFFKRSRKPVSENNETY
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
atgtctttcgaatctttcaattttgctccggctgttatggctggagtaagagcctgcggc
tataaagagcccactcctattcaggctcaggctattccccccattatggaagggcacgat
gttattggtctggctcaaacaggtacaggtaaaaccgctgcttatgctctgcccattatt
cagaaaatgctttccactcccaggggacgggtacgcacccttgttattgcaccgacccgg
gaactggcttgccagatttccgatagtttccgttcacttggtcagcgcgcccgtattcgg
gagtgctccatttacggcggtgtaaatatggaccagcaaatccgccgcttaaggagcggg
gtggatgtagtggttgcttgtcccggcaggcttctggaccatatatggcggggtactatt
gatgtttgcggggttgaaaccctgattatagacgaagctgaccgcatgtttgatatgggt
ttccagccggatatccagagcattttaaaatgcctggttcagcctcatcaaactctttta
ttttcggcaaccatgccgccggaggtccgtaagcttactcaggaaagtcaaaccaatccg
gtgactatacaggttgggactcaggctccggcaagcagtgtcagccatagcgtttatccg
gtgaaaagccaccagaaaacccctttgctgattgaaatactgaaaacaacggaaactaag
tctgtcctgatatttgcccgaaccaagtacggggcagaaaatctggctgacgaaatatct
aaagccggttttactaccgcttcgcttcagggtaatctttcccagaaccgccgtcatgcc
gttatggaaggattccgccgcggaaatttcaaaattctggtagctactgatattgccgcc
agaggcttggatattgaccatatttcccatgtgataaactacgatatgccggatactcct
gaagattatactcaccgtatcgggcggacagggcgttttgaccgcaccggtcaggccctc
agtttggtaaccggacgtgatggcgatatggtaagggatattcaaaggctcttaagcagc
cctattcagcgtcttcgggttgacgggtttgattatgcgactacccgcaatgatggacaa
caccagtcacaacgcagggattttgccccccgccgcggttattcaagtggcggttacaat
caccctgaaatgtctgtaaatgaggctttgcaaacggataccccggctgagatgccgcta
agccctgccagaccctataatgcaggtttcagaccgggccgcccctcaaattctgctccc
cgtttccgcagggagggtaacttagcaccccgtatacagaggcagtcttcttttgaggat
agccctgcgccggcacccagacctgaagcccggtttaatgaccgtccctcttatagaaaa
gagaatagctttcctgtttccgaacaagtgcgtcctgctttcaaaaaggaaaccgggttt
actccccgtgagcataacccggctgattttgaaaatcacgaacagccttcaggcaggcgt
cctgcccggtttaacggcaaggtttcttttgcagatcgccctgcccgtccggggaataaa
gtggggaaacctcccttctttaaacggtcaaggaaacccgtttcagagaataacgaaact
tactag
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