Dehalococcoides mccartyi GY50: GY50_0737
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Entry
GY50_0737 CDS
T02938
Name
(GenBank) putative RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
dmg
Dehalococcoides mccartyi GY50
Brite
KEGG Orthology (KO) [BR:
dmg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dmg03016
]
GY50_0737
Enzymes [BR:
dmg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
GY50_0737
Transfer RNA biogenesis [BR:
dmg03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
GY50_0737
Prokaryotic type
tRNA splicing ligases
GY50_0737
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AHB13517
LinkDB
All DBs
Position
682730..684190
Genome browser
AA seq
486 aa
AA seq
DB search
MTSPWQGILKKIDDYRWEIPQNYKVGMKVPGLVYASEHMLNQIWEEHAIEQIANVAFLPG
ITGKSMAMPDIHWGYGFPIGGVAATRISDGVISPGGVGFDINCGTRLLRTNLCVEEVQPK
INELLNGLFDKIPSGVGTGGNIKLSLTDIDNVMTRGGSWALEKGMGEAEDVKLTEESGSL
SGANPDEVSIKAKTRGSSQLGTLGSGNHFLEVQVVDEIFDTEVADVFGVQQTGQVLFLIH
TGSRGLGHQVCTDYVQLLNEMSKKYGINLPDRQLACAPLKSEDGQDYLAAMACAANYAWA
NRQCITQWAREVFMKIFEKGPRDLGMSQIYDVAHNIAKIEEHTVDGKIQNVCVHRKGATR
SFPAGRPEIPAVYRKVGQPVIIPGDMGRYSYVAVGTETAMHETFGSTCHGAGRILSRGAA
KKTASGAQLIDTLKTQGISIRVGDIGSLVEEASEAYKDVADVVEVTHKAGIARNIFKTRP
LGVIKG
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atgaccagcccgtggcagggaatactaaaaaaaatagatgattaccgttgggaaattcct
caaaactacaaagtaggtatgaaagtgcccggtctggtatatgccagtgagcatatgctt
aaccaaatatgggaggagcatgctatagagcagattgccaatgtagctttcttgcctggc
attaccggcaagtctatggcgatgcctgatatacactgggggtatggatttcctattgga
ggggtggctgctacccgaataagtgatggagtaatctcaccgggtggtgtaggttttgat
ataaactgcggaacccgccttttgaggacgaacctgtgcgtggaagaagtgcagccaaag
ataaacgaacttttaaatggactttttgacaaaataccctccggtgtgggtactggcggt
aatataaaactaagcctgaccgatattgataatgtaatgacccgcggtgggagctgggct
ttggaaaaaggtatgggcgaagccgaagatgttaaactgacggaagaatccggcagcttg
tccggtgcgaaccctgacgaagtttccattaaagccaagaccagaggttcatcccagctg
ggtacactgggttcaggcaaccactttttggaagtgcaggttgtagatgaaatatttgac
actgaagtggcagatgtatttggagttcagcaaacagggcaagtgctttttcttatccac
accggttcgcggggtttgggacatcaggtatgcactgattacgtacagctgttaaacgag
atgtctaaaaagtatggcataaatttacctgaccgtcagctggcctgtgccccgttaaaa
tcagaagatggtcaggattatctggcagcgatggcatgtgccgctaattatgcttgggct
aaccgccagtgcattacccagtgggcacgtgaagtatttatgaaaatatttgaaaaaggc
ccgcgtgatttaggtatgagccagatatacgatgtagcccataatattgccaagatagag
gaacatacggtagacggtaaaattcaaaatgtgtgtgtccatcgcaaaggtgctacccgc
tctttccctgccgggcggcctgaaataccagctgtttaccgaaaagtagggcagcctgtt
ataatacccggtgatatggggagatactcttatgtagcggtaggtaccgagactgccatg
catgaaacattcggatctacctgccatggtgccggcaggatactaagccggggtgcagcc
aaaaaaactgcgtccggtgcccagcttatagatacccttaagactcaggggataagtata
agggtaggagatattggcagtttggtggaagaagcatccgaggcctacaaagatgtggct
gatgtggtggaagtgactcacaaagctggtattgcccggaacatatttaaaaccagaccg
ttgggagtaataaaaggataa
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