Dehalococcoides mccartyi GY50: GY50_1001
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Entry
GY50_1001 CDS
T02938
Symbol
pcrA
Name
(GenBank) DNA helicase II / ATP-dependent DNA helicase PcrA
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
dmg
Dehalococcoides mccartyi GY50
Pathway
dmg03420
Nucleotide excision repair
dmg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dmg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GY50_1001 (pcrA)
03430 Mismatch repair
GY50_1001 (pcrA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dmg03400
]
GY50_1001 (pcrA)
Enzymes [BR:
dmg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GY50_1001 (pcrA)
DNA repair and recombination proteins [BR:
dmg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GY50_1001 (pcrA)
MMR (mismatch excision repair)
Other MMR factors
GY50_1001 (pcrA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
Viral_helicase1
AAA_30
AAA_11
CarD_TRCF_RID
ResIII
Motif
Other DBs
NCBI-ProteinID:
AHB13774
LinkDB
All DBs
Position
complement(938374..940590)
Genome browser
AA seq
738 aa
AA seq
DB search
MQDILTGLNPAQKQAVEAVEGPVLILAGPGSGKTRVITHRIAYLIKVVGINPHRIMAVTF
TNKAAREMETRLNLLAPSAAGRLTMGTFHAICARILRQDGLPLGVPADFVIYDDDDQQSL
IKQAMAELELDPKRYPPASIRNAISQAKSQLVLPAYYFEKGRSYFEEVVGRVYELYEKRL
KQNKALDFDDLLLKVVQLFKQHPEVLARYQERYLHVMVDEFQDTNLVQYELVKMLSAKYK
NICVVGDPDQSIYSWRSADLRNVFNFETDNPGAKVILLEQNYRSTKNILEAASCVIAPNS
GRKPITLWTENESGQPIAVVETFNEQEEAQFVVSEIEKLTRYEKFSPGDIAILYRTNAQS
RALEEAFIRYGMPYRLVSGTRFYQRREVKDIVAYLRLLQNPQDSVSLQRVINIPTRGIGA
KTLSDLGQFAREQDISLYESLINLSDENAPKPPIPSRGLKPLTDFGLLLKSLVADARNLP
LLNLLDRLLEGINYREFLFASEDGEERWDNILELRTVAQQYQEIAPPEGLSAFLESVALV
SDLDSLEEGVSAVTLITLHQAKGLEYPVVFMVGMEEGVLPHSRSFDDPAQMQEERRLCYV
GVTRARKRLYLVRAFRRSLMGQSNVNEPSRYLKDIPQSITKGREKQPLSGQHTAASAASP
VIKQHLQSAGMPIKSAAAPAPKLLELEAGDKVLHPQFGEGIVTSINRVKNDAEVMISFHS
VGMKRLMLSFARLTKLEN
NT seq
2217 nt
NT seq
+upstream
nt +downstream
nt
atgcaagacatacttacagggctgaaccccgctcaaaaacaggccgttgaagccgtggaa
gggccggtgcttatactggccggtccgggcagcggtaaaaccagggttattacccaccgg
attgcctacctgattaaagtagtaggtataaacccccaccgcattatggctgttaccttt
accaacaaggccgcccgtgaaatggagacccgcttaaacctgctggctccctcagcggcg
ggacgtctgactatgggcacttttcacgctatctgcgcccgcatactcaggcaggacggt
ctgcctttaggtgtgccggctgactttgtaatatacgatgatgatgaccagcaaagcctt
atcaagcaggctatggccgagctggagctggaccccaagcgttatccgcctgcttccatc
agaaatgccatcagccaggccaaaagccagctggtgcttccggcgtattactttgaaaaa
ggccggagctattttgaagaggtggtaggcagggtttacgaactctacgaaaaacgcctt
aagcagaacaaggcactggattttgatgacctgctgctgaaggttgttcagctgtttaag
cagcaccctgaggtgctggccaggtatcaggaacgttatctgcatgtaatggtagatgag
tttcaggataccaatctggttcagtatgagctggtaaagatgctgtctgccaagtacaaa
aatatctgtgtggtgggtgaccctgaccagtccatttattcgtggcgttcggcagacctg
agaaatgtctttaattttgaaacagacaatccgggtgccaaagtgattttgctggagcag
aattaccgctctaccaaaaatattctggaagcggcttcgtgtgtaattgccccgaacagc
gggcgtaaacctatcactttgtggactgaaaatgaatccggccagcctatagcagtagtt
gaaacctttaacgagcaggaagaagcccagtttgtagtttctgaaattgaaaaactgacc
cggtatgaaaagttcagtcctggtgatatagctattctttaccgcactaatgcccagtca
cgggccctggaagaagcatttatccgttacggcatgccttaccgtctggtttccggcacc
cgcttttaccagcggcgtgaggttaaagatattgtggcttatctgcgtttgctgcaaaac
cctcaggatagcgtcagcctccagagggttataaatatacccacccgcggaataggggct
aaaaccctttctgatttgggccagtttgccagagagcaggatatcagcctgtatgagtca
cttataaatttatcagatgaaaatgcccccaaaccgcccatacccagccggggcttaaaa
cccctgactgacttcggtcttttactgaagtcactggtggcggatgcccgtaatttgccc
cttttaaacctgctggacaggctgcttgagggtataaattaccgtgaattcctgtttgcc
tccgaagacggggaggagcgctgggataatatacttgaactgcggacagttgcccagcag
tatcaggaaatagccccgcccgaagggctttcggcttttctggaaagcgtggcattggta
tcagatttagacagccttgaggaaggtgtttcggccgttacccttattaccctgcatcag
gccaaagggctggagtatccggtggttttcatggtgggtatggaagagggtgtcctgcct
cacagccgttcgtttgatgaccctgcccagatgcaggaagaacgccgcctgtgttatgtg
ggtgtaacccgtgcccgcaaacggctttacctggtgcgggctttccgccgctctcttatg
gggcagagcaatgtaaacgaaccatcacgttatcttaaggatataccccagagtatcacc
aaaggccgtgaaaaacagcccttgtccgggcagcatactgccgcttcggcagcttcacct
gttatcaaacagcatctgcaaagtgcgggtatgcccattaagtctgccgctgctcccgcc
cccaaactgctggaactggaagcgggtgataaggtgctgcacccccagtttggcgaaggg
attgtaaccagtatcaaccgggtaaaaaatgatgccgaggttatgatatctttccattcg
gtaggcatgaaacgcctgatgctcagctttgcccgcctgaccaaactggaaaactag
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