Dehalococcoides mccartyi GY50: GY50_1114
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Entry
GY50_1114 CDS
T02938
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
dmg
Dehalococcoides mccartyi GY50
Pathway
dmg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dmg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GY50_1114 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dmg03400
]
GY50_1114 (mfd)
Enzymes [BR:
dmg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GY50_1114 (mfd)
DNA repair and recombination proteins [BR:
dmg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
GY50_1114 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
AroM
AAA_22
AAA_16
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AHB13885
LinkDB
All DBs
Position
complement(1036806..1040252)
Genome browser
AA seq
1148 aa
AA seq
DB search
MNLSGLLPLIDQSPSFDSLFQALDRGEADISVLDAGRGFSLASVYRRLKCPMLVITSQPE
RARELLEQIAAYTGEEPGFLPDPSLLPYQRAVSDRNSSLEKMRLAGILGGYIRSGDSRII
VTAVPALLQRYVSPEIFKQSFIQVWAGLEIEPQDLISRFQQLGYRQESIVEIPGTYSHRG
GMLDIFPHTEDNPVRLEFFGNTLESLRNFDPKSQRSGKAVNELTISPASELFHLGQLPRK
DINNRLDILLTDNLNPEFSRTLSADINHLNEGLKPEYPEFFAPLFNTSSILDYLPSDALV
VLDEPASIEQAAFHLDKEAEELRSDRLSHGELPSVYPRPYFNWAEISAMLKTRKRLIMAS
FGRESESLKLDFTSPDNYVGRLSALYEKLPELKGHTGRVVIVSHQAARLAELLKERSILA
VVQTDVLTPPPPASLSLVQGILGSGWSLSGNLHILTDAELFGFVKQRRLPSKRPSARKGV
VLDIKPGEFVVHIDHGVALFSGVSHMNRDGMDKEYLILQYAGGDKLYVPTDQMDRVNRFI
GSGDEPPSLHRLGTQEWQRAKEKASESAEETARELLDIYAKRELANGYAFSSDTVWQQEM
EASFPYVETPDQLKALCDIKEDMEKTRPMDRLILGDVGYGKTEVAIRAAFKAVMDGKQVA
VLVPTTVLAQQHYTTFRERLATFPVKVEVLSRFRSQSEQKEVVENMEKGEVDICIGTHRL
LQADIKFKDLGLVIIDEEQRFGVAHKEFFKKLRAQVDVLTLSATPIPRTLHMSMVGVRDM
SVIETPPGERLPIKTVVAAFDERLIREAILREMERNGQVFFVSNRVMGINLLAERIQKLV
PEARIGIGHGQMAEDKLAAVMADFVRHELDVLVCTTIIESGVDVPNANTLIINRADRFGL
TQLYQLRGRVGRSSQLAYAYFLYDKEKHLSGDAEKRLKTIYEAAELGAGYGIAMKDLEIR
GAGTLLGVKQSGCINSVGFNLYTQMLSEAVAGLKAAGSGLSKEEIRIQNMPAPKLDLPLD
AFIPEYYIQDLDLRLSIYQQLSTLASLAGVLEKEKELTDRFGVMPKELENLLYSFRLRLL
AKKAHVETIVTEGSQIVVRMLGGLIINKALLEPLRAGVVAGRNQVAIQFRKTGDSWKEVL
EEIIWRLG
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
ttgaatcttagcggtttgttgcctcttatagaccaaagcccgtcatttgacagcctattt
caagctctggataggggtgaagctgacatttcggttttagatgcggggcgggggtttagt
ctggcatccgtataccgcaggctaaaatgccccatgctggttattacctcgcagccggag
cgggcaagggaacttttggagcagatagctgcttatacaggagaggagccgggttttctg
cctgaccccagtctgctgccttatcagcgggctgtttctgaccgtaattcttcactggaa
aagatgcggctggcaggcattctgggcgggtatatccgcagcggagattcacggataata
gttacggctgtgccggctttgctgcagcggtacgtttctccggaaatatttaaacaatct
tttatacaagtctgggccgggttggaaatagaaccccaggacctaatcagccgttttcag
cagttgggataccgccaggaaagcatagtggagataccgggtacatattcccatcggggc
ggcatgttggatatttttcctcataccgaagataatccggtaagattggaatttttcggt
aatactctggaaagtctgcgtaattttgatcccaagagccagcgttcgggaaaagcggta
aatgagcttactataagccccgcaagtgagctttttcatctggggcagctgccccgtaag
gacattaataaccggctggatattttgctcacagataatctaaatcccgaattcagccgt
actctgtcagcagatataaaccatcttaacgagggcctgaaacccgaataccccgaattt
ttcgctcctctttttaatacctcaagcatacttgattaccttccgtcagatgctctggta
gtgctggatgaacctgcctccatagagcaggcagcttttcatctggataaagaagccgaa
gaactgcgctctgatcgtctgtcacatggtgaacttccttccgtctatccccgtccgtat
tttaactgggcagagatatccgccatgctgaaaaccagaaaacggcttattatggcctcc
ttcgggcgggagagtgagtctttaaagctggattttacttccccggataattatgtaggg
cgtttatccgctttgtatgaaaaattgccggaactaaaagggcacactggcagagtggtt
attgtcagtcatcaggccgcccgtctagctgagcttttaaaagagcgcagtattttggcg
gttgtccagacagatgtattaaccccccctccgcctgccagtctcagtttggttcaaggg
atattgggttccggctggagtttaagcggtaacttgcatattctcacggatgccgaactt
ttcggctttgtaaaacagcggcgtctgccttccaagcgtccgtctgcccgtaagggtgtg
gtgctggatataaaaccgggtgaatttgtggtgcatatagaccatggtgtggctttgttc
agcggagtcagccatatgaaccgtgatggtatggataaagagtacctgatactccagtat
gccggcggtgacaaactttatgtgccgacagatcaaatggacagagtaaaccgttttata
ggcagcggagatgaaccgccgtctttgcaccgcttgggtactcaggaatggcaaagggca
aaagaaaaggccagtgaatccgcggaggaaaccgcccgcgaactccttgatatctatgcc
aaacgcgagttggcaaatggctatgcattttcgtcagatactgtctggcagcaagaaatg
gaggcatcatttccgtatgtggaaactcctgaccagctgaaagctctgtgcgatatcaaa
gaagatatggaaaaaacccgccctatggacaggcttatactgggggacgttggctacggt
aaaacagaagtagctatacgggcagctttcaaggcggtcatggacggcaagcaggtggca
gtgttggtacctactacagtgcttgcccagcagcattacactactttccgtgagcggctg
gctacttttccggtcaaagtagaggtgcttagccgttttcgcagccagtccgaacagaaa
gaagtggttgaaaatatggaaaaaggcgaagtggatatctgcataggtactcaccgcctg
cttcaggcagatataaagtttaaagatttgggactggtaattatagacgaagagcaacgc
ttcggggtagcgcacaaggaatttttcaagaaactgcgtgcccaagtagatgtgcttacc
cttagtgcaacacccattccccgtactttgcatatgtctatggttggggtaagggatatg
agtgttatagaaactccgcccggtgaacgcctgcctattaaaaccgtagtagctgctttt
gatgaacggctgatacgtgaagctatattgcgggagatggaaaggaacgggcaggtattt
ttcgtgagtaaccgggtaatgggcataaatttacttgcagagcgtattcagaagcttgtc
cccgaagcccgtataggtatcgggcacgggcagatggctgaagataagctagccgccgta
atggctgattttgtgcggcatgaactggacgtgctggtatgtactactattatagaatcc
ggagtggatgtgccgaatgccaatactctgattataaacagggcagaccgctttgggctt
acccagctttaccagctgcgggggcgggtggggcggagctcccagctggcatatgcctat
ttcctgtatgacaaagaaaaacacttaagcggtgatgctgaaaaacgcctgaaaactatt
tatgaagcagctgaacttggggcaggatatggtattgccatgaaagatttggaaataagg
ggtgcgggaacactgcttggcgtaaaacaatcaggttgtataaattcggtcggtttcaac
ctatacactcagatgctgtcagaagcagtagccggactgaaagctgccggaagcgggctt
tccaaagaagaaatacgcatccagaatatgcctgcccccaagctggatttacccttggac
gcatttatacccgaatactatatccaggatctggatttacgtttgtctatttaccagcaa
ttatcaactctggccagtctggcaggcgttctggaaaaggaaaaagaactgacagaccgg
ttcggggtaatgccaaaggaacttgaaaatctgctatattcattccgtttacgtttgctg
gctaaaaaagcccacgtggaaactatcgtaaccgaaggcagtcagatagtagtgcggatg
ctgggcgggctgataataaataaagctttgcttgaaccgcttagagcgggagtggtggca
gggcgtaatcaggtggctatccagttcagaaagactggcgatagttggaaagaagtgtta
gaagagattatctggcggctggggtag
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