Dehalococcoides mccartyi GY50: GY50_1502
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Entry
GY50_1502 CDS
T02938
Name
(GenBank) metal dependent phosphohydrolase
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
dmg
Dehalococcoides mccartyi GY50
Pathway
dmg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dmg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GY50_1502
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dmg03019
]
GY50_1502
Messenger RNA biogenesis [BR:
dmg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GY50_1502
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_KhpA-B
KH_2
LapA_dom
fvmYukDl_N
BTBD16_C
DUF4407
DUF668
Motif
Other DBs
NCBI-ProteinID:
AHB14271
LinkDB
All DBs
Position
1378427..1380010
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AA seq
527 aa
AA seq
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MFEFFMETAPTTTTGLPLSAILAIFFSFIIGIVFGGMALFVFRGFIMNRQLRIAQRKATK
MLADSKTEAKDVLVEAKHEADKVRNSAESELKERRSELAKQENRVMQKTEALDRKLENLE
QREQSLTNREKSIDETQSQIEEIRTAELKRLEEVANMTTEQAKSSLLEMLEGEMQQETSR
RLREWEIKIKAEADEKAREVVSQAIQRCASDVVTETTTNVVPLPSDEMKGRLIGREGRNI
RALEQATGVDLIIDDTPEAVTISSFDPVRREVARQALSKLIIDGRIHPARIEEVVTKAKE
EVEAAMIASGEQAAYQAGVHGLRPEIIKVMGRLKYRTSYGQNVLQHSIEVAQMSGMIGSE
LGVNVTLARRAGFLHDIGKAVDRDVEGTHTQIGADMVKQWEKSPEVIKGVAEHHFDTPTV
SIWGFIVSAADAISSARPGARRESLENYIKRLKALEEIADSFKGVEKSFAIQAGREVRIM
VKPDEIDDLGAMRLARDIVKKIEDGLEYPGQIKVTVIRETRSVDFAK
NT seq
1584 nt
NT seq
+upstream
nt +downstream
nt
atgtttgagtttttcatggagacagcgccgacaacaactaccggcctgcctttgtctgcc
attctggcaatcttttttagttttattataggtattgtattcggcggcatggcccttttt
gtattcaggggctttataatgaaccgccagctccgcatcgcccagcgaaaagcaaccaaa
atgctggctgactctaaaacggaagctaaagatgtgctggtggaagccaaacacgaagcg
gacaaggtccgcaattccgccgagtctgagcttaaagaacgccgttctgaactggctaaa
caggaaaaccgggttatgcagaagaccgaagccctggaccgtaagcttgaaaatcttgaa
cagcgcgaacagtctttgaccaaccgggaaaaaagtattgacgaaacccagtctcagatt
gaagaaatacgcacagccgaactgaaacgtctggaagaagtggccaacatgactactgag
caggccaaatcaagtttgcttgaaatgctggaaggtgaaatgcagcaggagacctcccgc
cgcctgcgtgagtgggagataaaaataaaagccgaagcggatgaaaaagcccgcgaggtt
gtttcccaggctatccagcgttgtgcctctgatgtagttaccgaaactaccaccaatgtc
gtgcccttgccaagcgatgaaatgaagggcaggctgattggccgcgaaggccgcaatata
cgggctctggagcaggccaccggcgtagacctaattatagatgacactccggaggcagtt
actatctccagttttgacccggtaaggcgtgaagttgccagacaggcactttcaaaactt
atcatcgacgggcgtattcatccggcccgtattgaagaagtggtaaccaaagccaaagag
gaagtagaagccgctatgatagcttccggcgaacaggccgcttatcaggcaggcgttcac
ggactgcggcccgaaataatcaaagtaatgggacggctgaaataccgcaccagttacgga
cagaatgttcttcagcacagtatagaggtagcccagatgtccggcatgataggcagcgag
ttgggtgtaaatgttacccttgccagacgggccggcttcctgcatgacataggcaaagcg
gttgaccgtgacgtggaaggcacccatacccagataggtgcggatatggttaaacagtgg
gaaaaatcacccgaggttatcaagggtgtggctgaacaccattttgacactcccactgtc
tccatctggggttttatagtatccgccgcagacgccatttcttcggccagacccggcgcc
cgccgcgaatcactggaaaactatatcaaacgcctcaaggccctcgaagaaattgccgac
agcttcaaaggggttgaaaaatcctttgccatacaggccgggcgcgaagtgcgcatcatg
gttaaacctgacgagattgatgacctgggtgctatgcggctggccagagatattgtcaag
aagattgaagacgggctggagtaccccggacagattaaggttaccgttatccgggaaacc
aggtccgtagactttgccaagtaa
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