Desulfosporosinus meridiei: Desmer_0239
Help
Entry
Desmer_0239 CDS
T02207
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
dmi
Desulfosporosinus meridiei
Pathway
dmi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
dmi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Desmer_0239
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dmi03021
]
Desmer_0239
03400 DNA repair and recombination proteins [BR:
dmi03400
]
Desmer_0239
Enzymes [BR:
dmi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Desmer_0239
Transcription machinery [BR:
dmi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Desmer_0239
DNA repair and recombination proteins [BR:
dmi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Desmer_0239
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
AFQ42301
UniProt:
J7IUF1
LinkDB
All DBs
Position
229905..233357
Genome browser
AA seq
1150 aa
AA seq
DB search
MLDVNNFDRMRIGLASPDMIREWSFGEVKKPETINYRTLKPEREGLFCEKIFGPTRDWEC
HCGKYKRVRYKGIVCDRCGVEVTRSKVRRERMGHIVLAAPVSHIWYFKGIPSRMGLLLDM
SPRALEKVLYFVSYIVTDPGDTSLMKKQLLTETEYREYRDKYGDRFQASMGAEAVKELLA
EMDLEKLNEELRIELKEVSGQRKIRAIRRLEVVEAFKSSGNRPDWMIMDVVPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPDIIVRNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPNLKLHQCGLPKE
MALELFKPFVMKKLVNEGHAHNIKSAKRMVERVRAEVWDVLEEVISDHPVLLNRAPTLHR
LGIQAFEPILVEGRALQIHPLVCTAYNADFDGDQMAVHVPLSAEAQSEARLLMLSAHNIL
NPKDGRPVATPTQDMVLGSYYLTMQRPGAFGEGKIFKDYDEAVLAYDTKEVHLQARIKVR
RNDGKLLETTVGRLIFNSVIPPQIGYFNEVVGKKGLADIVAKTYRKAGYEATAQLLDGLK
SQGFKFSTRAGMTVGLTDITVPKEKTEILTAADSSVAKTELQYRRGLITNEERYNLVIDT
WAKATKTVTQALMDSLDEFNPVYMMATSGARGNIQQLRQLAGMRGLMADPSGRTIELPIK
ANFREGLTVLEYFISSHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREEDCGTLNGI
MVEDIKDGPEIIEPLVDRLVGRFVLEDLHHPETGEVLASPDTEMTEEQAAEIAKCFDSAV
IRSVLTCKSRYGVCKKCYGRNLATGRPVEMGEAVGIIAAQSIGEPGTQLTMRTFHTGGVA
GDDITQGLPRVEELFEARKPKGQAIIAETVGKVSISEIKGRREVDLLTEADEHIVYSIPY
GSRLCVKEGQMVEAGDELTEGSINPHDMLKVKGQRGVQVYLLGEVQRVYRLQGVDINDKH
IEVMVRQMLRKVKIDDAGDTSLLPGGLIDVFDFQDENAQAIAEGGEPAVAHPVLLGITKA
SLATDSFLSAASFQETTRVLTEAAIKGKVDPLLGLKENVIIGKLIPAGTGMLRYHNVKTL
DASETELLTR
NT seq
3453 nt
NT seq
+upstream
nt +downstream
nt
ttgcttgacgtcaataacttcgaccgtatgcgtatcggtttagcttctccggacatgatt
cgggaatggtcattcggagaagtaaagaagcctgaaactattaactatcggaccttaaag
ccggaacgtgaaggtttgttttgtgaaaaaatctttggccctacccgagattgggagtgt
cactgcgggaaatacaagagagttcgctataaaggaattgtctgtgatcgttgcggagtt
gaagtaacacgttcaaaagttcgccgcgagcggatgggacacattgttctagcggctcct
gtatcacatatctggtattttaaagggattccgagtcgtatggggttgcttttagacatg
tccccacgtgctttggaaaaagtgttatattttgtttcatatattgttacagaccctggc
gatacttctttaatgaagaagcagctcctcactgaaacggagtatagggaatatcgtgat
aaatatggagatcgttttcaagccagcatgggcgcggaagccgttaaagaattactcgct
gaaatggatttagaaaaactcaatgaagaacttcgaattgagctgaaggaagtttccgga
cagcgaaaaatccgtgctattcgtcgtcttgaagtcgtagaagcttttaagtcctccggc
aatcgtcctgactggatgatcatggatgttgtaccggtaattccaccggaactacgacct
atggtgcaactggacggtggtcgatttgctacatcggatcttaatgacctctatcgtcgg
gtaatcaacagaaataaccgtctaaaacgtctattagatctgggtgcgcctgatattatt
gtgcgaaacgaaaaaaggatgctccaagaggcagtcgatgcattgattgataatggccgc
cgtggtcgtcctgtaaccggcccgggaaacaggccgcttaagtccctcagtgatatgtta
aaaggaaagcaaggccgtttccgtcagaacttattaggtaagcgggtggattattcaggt
cgttccgttatcgtagttggtccgaatctcaagcttcatcagtgtggtctgcctaaagaa
atggcgttggaactctttaagccatttgtgatgaaaaagcttgttaatgaaggtcatgct
cacaatatcaaaagtgccaaacgcatggtcgaaagagtacgtgccgaggtttgggatgtt
cttgaagaggttatctcagatcacccagtccttttgaatcgtgcaccaactcttcaccgt
ttaggaattcaggcctttgagccaattttggtcgaaggtcgagctctgcagattcaccca
ttagtttgtaccgcgtataatgcggacttcgacggtgaccagatggcagttcacgtgcca
ttgtcggcagaggctcagtctgaagcgagactattaatgctctcagctcataatattctt
aacccaaaagatggcaggcctgttgccactcctactcaggatatggtattgggatcctat
tatctgacgatgcagagaccgggagcttttggcgaagggaaaatattcaaagactacgac
gaagctgttttagcctacgatactaaagaggttcacttgcaggctaggattaaagttcga
cgtaatgatggaaaactgttagagacaacggttggccggctgatttttaactccgtcatc
cctcctcaaattggatatttcaatgaagtggtcggcaaaaaaggacttgcggatattgtt
gctaagacttatcgtaaggcaggctatgaagcgacagcccaattgttggatggactgaag
agtcaaggtttcaagttttcaactagagcaggtatgactgttggtttaacagatattact
gtaccaaaggagaaaacagagatcctcactgctgctgattcttccgtcgcaaagacggaa
ttacaataccggcgcggtttaataaccaacgaagagcgatataatctagtcattgatact
tgggcaaaagctacaaaaacagtaacccaagcattaatggattctttagatgagtttaac
ccggtctatatgatggcgacatccggcgcccgtggtaatattcagcagcttagacaattg
gcaggaatgaggggacttatggcagacccttccggacgaaccatcgagttgcctattaag
gccaacttccgcgaaggacttacggttttagagtactttatttcttctcacggtgctcgt
aaaggtctggccgatactgccctaagaaccgctgactcaggttacctgacacggcgactg
gtagacgtctctcaagatgtgattgtacgggaagaggattgtggaaccttaaacggcatt
atggtcgaggatatcaaagatggcccggaaataatcgagccgttggtagatcgtcttgtt
ggtcgttttgtcttagaggatctccatcatccagaaaccggagaagtcttggcttcgccg
gatactgaaatgacagaagaacaagccgccgaaattgcaaaatgtttcgattcggcagta
attcgttcggtcttaacctgcaaatcacggtacggggtatgtaagaaatgttatggtcga
aatttagcaacaggtagaccggttgagatgggggaagcggtagggattattgccgctcaa
tccatcggggagcctggaactcagttgaccatgcgtaccttccacacagggggagttgcc
ggagatgatattacccaaggtcttccacgggtagaggagctattcgaagcacgtaaacct
aagggtcaagcgatcatcgcagaaacagtcggaaaagtctcgatcagcgagattaaagga
cgacgtgaggtagatcttctcacagaggcagatgaacacatcgtatattccatcccctat
ggttccagactttgtgttaaagaaggacagatggtcgaagctggggatgaattaactgaa
ggtagtattaaccctcatgatatgcttaaggtcaaaggacaacggggagtgcaagtctat
ctattaggagaagtccagcgtgtatacagactccaaggggtagatatcaacgataagcat
attgaggtaatggtacgtcagatgcttcgtaaagtgaaaattgatgatgcgggagacaca
agcttgcttccgggtgggcttattgatgtctttgatttccaagatgagaatgctcaggca
attgcagaaggcggagaaccggcggttgctcacccagttctgttggggattacgaaggct
tcattggctaccgactccttcctgtcggcggcatctttccaagaaaccaccagagtgctt
accgaggcggcaatcaaaggaaaggttgatccattgcttggtctaaaagaaaatgtgatc
atcggaaagttaattcctgccggaacgggcatgttaagatatcataatgtaaaaacattg
gatgcaagtgagaccgaattattgacacgttag
DBGET
integrated database retrieval system
