Desulfosporosinus meridiei: Desmer_0901
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Entry
Desmer_0901 CDS
T02207
Name
(GenBank) ATP-dependent DNA helicase, RecQ-like protein
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
dmi
Desulfosporosinus meridiei
Pathway
dmi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dmi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Desmer_0901
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dmi03019
]
Desmer_0901
03400 DNA repair and recombination proteins [BR:
dmi03400
]
Desmer_0901
Enzymes [BR:
dmi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Desmer_0901
Messenger RNA biogenesis [BR:
dmi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Desmer_0901
DNA repair and recombination proteins [BR:
dmi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Desmer_0901
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HTH_40
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Helicase_Sgs1
HTH_7
T4SS-DNA_transf
Motif
Other DBs
NCBI-ProteinID:
AFQ42929
UniProt:
J7IRW3
LinkDB
All DBs
Position
942741..944921
Genome browser
AA seq
726 aa
AA seq
DB search
MIKKALEVLQRYFGFTQFRDGQQKVIGSLLQGLDTLAIMPTGAGKSLAYQIPALLFKGTT
LVISPLISLMKDQVDALLQYGVPATFINSSLSLNEVRSRIDGVTRGKYKLLYIAPERLES
ESFRGLLESLQVSFLVIDEAHCVSQWGHDFRPSYLHLGPFLKSLPQKPIIGAFTATATEE
VQADIVRLLELDKPSIFVTGFDRPNLMFSTFRGENKKEFVLGYTKAHVNQPGIIYAATRK
EVDNLQSFLTRSGLKVGKYHAGMSDPDRQKTQEDFLFDEITVMVATNAFGMGIDKSNVRY
VIHYNMPKNMEAYYQEAGRAGRDGEPGECLLLFSPQDVVLQRFLIEQTVLQPERKMNELK
KLQGMVDYCHSPRCLRKTILEYFGEENVQAKCNNCSNCNDEREIVDITLEAQKIFSCIYR
MRERFGIGMVADVLKGSRKAKIRELRFDELSTYGIMHNVPLQDIKDLINYLVAEGYLQLA
NGEYPVVKLQPNAASVLKGEAKVSRKITQKPSRVESEEVSLFEKLRELRRELAIRENLPP
YLIFADSTLREMAQICPMDHGAMISVSGVGERKLEKYGNEFLEVIKRFLENAAIDKKENS
SEKCVSAKCLAQQDKTGPEVIANSKASSHLQTFQMYKEGHSLAAIAKIRKVTPITVQNHF
VRCSMDGHAVPWDDFIPKEQEVHILEAIRQVGGEKLRPIKDLLPDEVEWFTIRAVLEKYK
IIDSKE
NT seq
2181 nt
NT seq
+upstream
nt +downstream
nt
atgattaagaaggccttggaggtattgcaaaggtatttcgggtttactcaatttcgagat
ggccagcaaaaagtgattggaagtttactccagggcttagatactttagccattatgccg
acaggagcgggaaagtcacttgcttatcagataccagccctattgttcaaagggacgact
ctggtaatctctcctctgatttctctaatgaaagatcaggtggatgcccttttacaatat
ggagttcccgcgacgtttattaatagttcactttctcttaatgaagtaaggtcacgaatt
gacggggtaacacgcggtaaatataagcttttgtatattgcccctgaacgattagagtca
gaaagttttcggggtcttttagaatcattgcaggtttctttccttgtgatcgatgaggct
cattgtgtttcccagtggggccatgattttaggcctagctaccttcatttaggaccattc
cttaagtccctcccccaaaaaccgatcattggggcttttacggcaacagcaactgaggaa
gttcaggcagatattgtccgattattagagctagacaaacctagcatatttgttacagga
tttgatcgtccaaatctgatgttctctacctttagaggagaaaacaagaaggaatttgtg
cttggttataccaaagcgcatgttaaccaacctgggattatttatgccgcgacacgcaaa
gaggtggataatcttcaaagctttttgacaagaagcggtttgaaggtgggaaaatatcat
gcaggcatgagtgacccagaccgccaaaaaacccaggaggatttcctctttgatgagata
accgttatggtggctacaaacgcctttggaatgggaattgacaaatctaatgttcgatat
gtaattcactacaatatgcctaaaaacatggaagcatactatcaagaggcagggcgggca
gggcgagatggagaaccaggagagtgccttttattgttttctcctcaggatgttgtattg
caacgattcttaattgagcagaccgttttacaaccagaacgaaaaatgaatgagttaaag
aagctccaaggtatggttgattactgccattcccctcggtgtctgcgcaaaacaattcta
gagtattttggagaagaaaatgtacaagctaaatgtaacaattgcagtaattgtaatgat
gagcgtgaaattgtagacattacgttggaagctcaaaaaatattctcttgcatttatcga
atgcgagaacggtttggtataggaatggttgctgatgttttgaaaggctcacgaaaagct
aagatacgagaacttcgctttgatgaactatcaacctatggcattatgcataatgttccc
ttgcaagatattaaggatctcatcaactatttagttgcagaggggtatttgcaattagct
aatggagaatacccagtcgtaaaacttcagcctaatgcagcttcggtcttaaaaggggaa
gcgaaagtatctcgaaaaataacgcaaaaaccgtcacgtgttgaaagcgaagaggttagt
ctgtttgaaaaactacgtgaactccgcagagaactagctattcgagaaaacctccccccg
tatttgattttcgcagacagtaccttaagagaaatggctcaaatttgtccaatggatcac
ggggcaatgattagtgttagtggagttggggaacggaaattagaaaaatacgggaacgaa
tttttggaagtgatcaagaggttcttagaaaatgcagcaattgataagaaagaaaactct
tctgaaaaatgtgttagcgctaagtgtttggctcaacaagataagactggccctgaggtc
attgctaattcaaaggcctccagtcatcttcagacatttcaaatgtataaagaagggcat
tctttggcagctattgcgaaaatcaggaaagttactcccattacagttcagaatcatttt
gtgcgctgcagtatggatggacatgctgtgccctgggatgattttatccctaaagaacaa
gaagtgcatatcttagaagcaatccgacaagtaggcggagaaaagttacgacctatcaaa
gatctccttcctgatgaggtggagtggtttacaattcgggcagtcttagaaaagtataaa
ataattgatagcaaagaatag
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