Desulfosporosinus meridiei: Desmer_0944
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Entry
Desmer_0944 CDS
T02207
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
dmi
Desulfosporosinus meridiei
Pathway
dmi03410
Base excision repair
dmi03430
Mismatch repair
dmi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
dmi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Desmer_0944
03430 Mismatch repair
Desmer_0944
03440 Homologous recombination
Desmer_0944
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dmi03400
]
Desmer_0944
DNA repair and recombination proteins [BR:
dmi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
Desmer_0944
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Desmer_0944
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Desmer_0944
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
AFQ42968
UniProt:
J7IV31
LinkDB
All DBs
Position
982876..985299
Genome browser
AA seq
807 aa
AA seq
DB search
MKRIWSAPKSSGRRSEILGNLLGVSPIVSEILVQRGYEKPEEAIEFLHPTLLNLNSPFCF
CDMRKTIERLTLALKRQEKILIYGDYDVDGVTSTTLLYKVLIDLGFQAVAYIPHRQDEGY
GLHAEAVERAAKAGVSVIITVDCGITAVAEVIQAKTSNIDIIITDHHEPGQVLPEAFAII
NPKLENSGYPFRDLAGVGVAFKLAQALLQSLGNLEVGIQTEMYLLDLVALGTIADLVPVV
GENRIFVHYGLRQMEETNHPGLAALLEECGLKDKPLKAGQIGFMVAPRINAAGRMDSARA
GLELLLSEDPERASELARQLTKENQMRQETEKEILAEAVSLLEGKPLPRVIVLSAENWHH
GVVGIVASRLVERYYRPVFMISEDGDEAKGSARGILGYPVLEQLSQQAHLLTKFGGHRQA
AGFSLLTKDIEKLREGLNTQALAFDEALFQEVLRVDSLVTLNMVSPELLRQLEQMAPFGL
GNPGPILACKEIPVHSLGAVGKEQSHIKFRFGSKGEQEGIAFRIGERLQDLQEKQTLDAA
FALDWNTFRGREDVQLMIKDVQPEADWTDPFIKDTKADTYQEIAATLEEPEIEWLDWRYM
PRSEWPLQKNEGLWVWDNRGSMPTLRLGNDLPNSDNSPKSLIHDKHLDGNEQVIVKQNLG
MILGLPLTGEDFKEGVEKFRELGIFRIALAGFESPLEERVRQRCCFISRDELVQLYRELQ
TKSKTANPFIWGGNQKVSQAQKAALKIFEELGFIQCLGGSDEFFLKWIPAKNKLELDSSS
RYRLTKERFDEALKFHKELLNTVLKVL
NT seq
2424 nt
NT seq
+upstream
nt +downstream
nt
gtgaaacgcatatggtcggcaccgaaatcttccggacgtaggtcggaaatactgggaaat
ttattaggggtttcgccgattgtctcagagatactggttcaaagagggtatgaaaagccg
gaagaggctattgaatttttgcatccgaccctcttaaatctaaattcccctttctgtttt
tgtgatatgaggaaaaccatagagagattaactttagccctaaagcgtcaggaaaagata
ctcatttacggagattatgatgttgatggagtgacaagtaccactttattatataaagta
cttatagatctgggttttcaagcggtggcctatatccctcaccgccaagatgaaggttat
ggtctccatgctgaggccgttgagcgtgctgctaaggcgggagtgagtgttataattacg
gttgactgtggaattacagcagtcgccgaagttatccaagcaaaaaccagtaatattgat
atcatcattactgaccaccatgaacccggtcaagtgttgccggaggcctttgctattatc
aatcctaagcttgaaaattcaggttacccatttcgtgatttagccggagttggggtagcg
tttaaattggctcaggccttgttacaatctctgggaaaccttgaagtaggcattcaaacg
gaaatgtatcttttagatttagttgctttagggactattgcagatcttgtcccggtagtt
ggggaaaaccggatctttgttcattatggtttacgccaaatggaagaaaccaatcaccct
ggcctagctgctcttctcgaggagtgtggtttaaaggataaaccacttaaagctggacaa
atcggctttatggttgctcccagaatcaacgctgctgggcggatggatagcgcccgagcg
gggttggagctgctcttatccgaggatcccgaacgagctagtgaacttgcccggcagtta
accaaagaaaaccaaatgcggcaggaaacagaaaaggagatccttgcagaggccgtttcc
ttgttagagggtaaaccgctgcccagagttatcgttctttcagcagaaaattggcatcat
ggggttgtggggattgtggcctcccgcttggtagaacggtattatcgaccggtttttatg
atctcggaagatggggatgaggctaagggatctgcccgtggaattctgggatatccggtt
ttggaacaattaagtcaacaggcccatcttctaacaaagtttggcggacatagacaagct
gctggcttttctctccttacaaaggatattgaaaaactcagagagggccttaatacgcaa
gcattagccttcgatgaagctctgtttcaagaagtcttacgagttgattccttagttact
ctgaatatggtctctccagaattacttcgtcaacttgagcaaatggcaccctttggactt
ggaaatcccggcccaattctagcttgtaaggaaattcctgtgcattccttgggcgctgtt
gggaaagaacaaagtcatattaaatttcgctttggatctaaaggagaacaagaagggatt
gctttcagaataggagaacgtttacaagatcttcaggaaaaacaaaccttggatgccgct
tttgctctcgattggaatacttttcgggggcgggaggatgttcaattaatgattaaggat
gtccagcctgaggcagattggacagatccttttatcaaagatactaaagctgatacatat
caggaaatagctgctacacttgaggagccggaaatagaatggttagattggagatatatg
ccgaggtctgaatggccattacaaaaaaatgaaggtttatgggtttgggacaataggggg
agtatgccgactcttcgacttgggaatgatttgcctaatagcgataattcacctaaaagt
ctcatccatgacaagcatctagatggcaatgaacaagtaatagttaagcaaaaccttggc
atgatactcggcctgccgctaacaggtgaggatttcaaggagggtgtcgaaaagtttcgg
gaattaggtatatttcgtattgcactagcaggatttgaaagccctcttgaggaaagagtt
cgtcagcgttgttgttttatatctcgggatgagctcgttcaattatatcgggaactccag
accaaatcgaaaacggctaacccctttatttggggtgggaatcaaaaagtatcccaagct
caaaaagctgccttgaagatatttgaagagttgggatttatccaatgcctaggcggatca
gacgagttctttctaaaatggattcccgcgaaaaacaaattagagctggactcttcttcg
cgctatcgcctaaccaaagaacggtttgatgaggcattaaagtttcacaaagaattatta
aatacagtgcttaaagttctgtaa
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