Desulfosporosinus meridiei: Desmer_3320
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Entry
Desmer_3320 CDS
T02207
Name
(GenBank) DNA/RNA helicase, superfamily II
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
dmi
Desulfosporosinus meridiei
Pathway
dmi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dmi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Desmer_3320
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dmi03019
]
Desmer_3320
03009 Ribosome biogenesis [BR:
dmi03009
]
Desmer_3320
Enzymes [BR:
dmi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Desmer_3320
Messenger RNA biogenesis [BR:
dmi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Desmer_3320
Ribosome biogenesis [BR:
dmi03009
]
Prokaryotic type
rRNA helicases
Desmer_3320
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_19
AAA_22
UvrD-helicase
SNF2-rel_dom
Terminase_6N
Motif
Other DBs
NCBI-ProteinID:
AFQ45193
UniProt:
J7J1J4
LinkDB
All DBs
Position
complement(3468190..3469635)
Genome browser
AA seq
481 aa
AA seq
DB search
MNKGNFNDFQLSSELLKAISLLNFISPSKVQEQVIPAVLAQKDIIVKSQTGSGKTAAFAI
PICELVDWEQNKPQALVLTPTRELAVQVKEDLFHIGRFRRIKVAAIFGKYPFHVQEKELK
QKTHVVVGTPGRLIDHIERGTLDISNIKYLVIDEADEMLNMGFIEQIERIIANLSHERVT
VLLSATMPQDINVLCSKIMRNPIRVEIEEQNPAADRIAQERYLVDQTDKMKLLQDLTMVE
NPDSCMIFCNTKQTVDEVYTELLKLDYSCDKLHGGMEQRDRLNVMKDFKQGYFRYLCATD
VASRGLDIEDITLVINYDIPYDRESYVHRIGRTGRVNKLGKAITFVTKNEDKFLKEIHDY
IGKEILLKERPDEATVHESKQDFMAKNNTLPEIKETKGVQLSTEIMKIHVNAGKKTKMRP
VDIVGTLCSIEGITPADIGIINILDVSTFVEILNNKGELVLQNLQNTPIKGRLRKVSKAD
R
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgaacaagggtaattttaacgactttcaattaagtagtgaattattaaaagcaattagc
ttactaaatttcatcagtcccagtaaagttcaggagcaagtgatcccggcagtcttggcc
caaaaggatatcatcgtcaagtcccagaccggaagcggaaagacggcggcctttgctatc
cctatttgtgaattagtggattgggaacagaataaaccccaggcattagtgcttaccccc
accagagaactcgcagttcaggtcaaagaagatctgtttcatatcggcagatttagaaga
ataaaagtagcagcaatttttgggaagtacccttttcatgttcaagaaaaggaacttaaa
caaaaaacccatgttgtggttggaaccccgggtcgcttgatcgatcatattgaaagagga
accttggatatatcaaatataaaatacctagtcattgatgaagccgatgaaatgttgaat
atgggctttatcgagcaaatcgaaaggatcattgccaacttgtctcatgaacgggtgacc
gttttattgtcagcgacaatgccccaagacatcaatgttttatgcagtaagattatgcga
aatcccattcgcgtggaaatcgaagaacagaatcctgcggccgaccggatcgctcaggaa
agatatcttgttgatcagacagataagatgaagcttcttcaagatctaacgatggttgaa
aacccggacagttgtatgatcttttgcaatactaagcaaactgtcgatgaagtttacaca
gaactcctgaagctggactattcttgtgataaacttcatggcggaatggaacaacgagat
cgattgaatgtcatgaaggattttaaacaaggatatttcagatatctatgtgcgacagat
gttgcctcaagaggtctggatatcgaggacattaccttggtcatcaattatgacatcccc
tacgaccgagaaagctatgttcatcggatcggaagaacaggacgagtcaacaaactgggt
aaagccataacctttgttaccaaaaatgaagacaagtttttaaaggaaatccacgactac
atcggcaaagagattcttctaaaggaaagaccggatgaagcaacggtacatgagtcaaaa
caggattttatggcgaaaaacaatactttgccagaaatcaaggaaacaaaaggcgtgcag
ttgagtaccgaaatcatgaagatccatgtgaatgccgggaagaaaacaaagatgagaccc
gtcgacattgtgggcacgctttgcagtattgagggcataaccccggcagatatcggaatc
atcaatatcctggatgtatcaacctttgttgaaatcttaaacaataagggtgagttggtg
ctgcagaatctgcagaacactccgattaagggccggcttcggaaggtaagcaaagcagac
cggtaa
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