Desulfosporosinus meridiei: Desmer_4294
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Entry
Desmer_4294 CDS
T02207
Name
(GenBank) DNA/RNA helicase, superfamily II
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
dmi
Desulfosporosinus meridiei
Pathway
dmi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dmi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Desmer_4294
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dmi03019
]
Desmer_4294
03009 Ribosome biogenesis [BR:
dmi03009
]
Desmer_4294
Enzymes [BR:
dmi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Desmer_4294
Messenger RNA biogenesis [BR:
dmi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Desmer_4294
Ribosome biogenesis [BR:
dmi03009
]
Prokaryotic type
rRNA helicases
Desmer_4294
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
DeaD_dimer
AAA_30
AAA_22
DD_DDX21-DDX50
NAT10_TcmA_helicase
Motif
Other DBs
NCBI-ProteinID:
AFQ46114
UniProt:
J7J175
LinkDB
All DBs
Position
complement(4486711..4488213)
Genome browser
AA seq
500 aa
AA seq
DB search
MATFTDLNLSELVMRSIINMGFEETTPIQEQTIPSAMEGKDLIGQAQTGTGKTAAYGIPL
VERIMGQSENIQGIVLAPTRELAVQVAEELNKIGQFKRIHALPIYGGQGIDWQIRALKKR
PHIIVATPGRLMDHMRRKTIRLHDIKIVVLDEADEMLNMGFLEDIETILKEVPEERQTLL
FSATMPRQIQNIAQRFMKEPQLISIKATGVTVSDIEQHYVEVTERLKFDVLSRILDIQSP
DLSIVFARTKRRVDELSEALSKRGYSAEGIHGDLTQSKRDSVLRQFKDGTIEVLVATDVA
ARGLDISGVTHVFNFDIPQDPESYVHRVGRTGRAGKSGLAITLVTPREIGMLRLIESVIK
RRIVRKPIPTIIEAVQGQQRLTMNEILRVIAEEDIEKYKSVAEELLAENDSITLLSAALK
IITKEPDNVEVKLTEAAPARRRGMGSGGRGMGNMGNARPPHGSYPRDNYGQKVDTWSRRK
SNDFRGTAGPQRGRDPKRNG
NT seq
1503 nt
NT seq
+upstream
nt +downstream
nt
ttggcgacatttacagacttaaatttaagcgaattagttatgagatcgattatcaacatg
gggtttgaagaaacgacacccattcaagaacagacgattccttcagcgatggaaggaaag
gatctgatcggacaggctcaaaccggtaccggtaaaacagcagcctatggaattcctttg
gtggagagaattatggggcaatccgagaatattcaagggattgttctggcacctactcgt
gagttagcagttcaagttgccgaggaattaaacaagatcggacagtttaaacgcattcat
gccttgcctatatacgggggacaaggtatcgactggcaaattcgcgctcttaagaagaga
cctcacattattgttgctacaccgggacgtttgatggatcatatgagaagaaagaccatt
cgcctgcatgacatcaagatcgttgtcctggatgaagcagacgagatgttaaatatgggc
ttcttagaggatattgaaactattctcaaggaagtaccggaggaacgtcaaaccttactt
ttctcagcaacaatgccgcgccagattcaaaatattgctcaacgctttatgaaggaacct
cagctgatcagcattaaggctactggtgttacagtatcagatattgagcagcactatgta
gaagttactgaacgcttaaagttcgatgtcttatcccgtatcttggacattcaatccccg
gatttgtccattgtctttgccagaaccaagcgccgggttgatgagctatctgaagcctta
agcaaacgtggctattcggcagaaggaattcatggtgacttaactcaaagtaagcgtgac
agcgtcttaagacaatttaaagatggcaccatcgaagtattggttgccacggatgtggca
gctcgaggtctagatattagcggagtgacccatgtcttcaactttgatattcctcaggat
ccggaaagctatgtccatcgggttggccgaaccggtcgggctggaaaatcaggcttggcc
atcaccttagtcactccacgtgagatagggatgctgcgtttgatcgaatccgtgattaag
cggagaatcgtccgcaaacccattcctacgatcattgaagcagtacaaggtcaacagcgt
ttaaccatgaacgagatcctgcgggttattgcagaagaagatatcgaaaaatacaaatcc
gttgctgaagaattgctcgccgaaaatgattccatcacacttttatcagcggctctcaag
attatcactaaagaaccggataatgttgaagtaaagctgactgaagcagctcctgcccga
agaaggggtatgggaagcggcggcagaggtatgggaaatatgggcaacgccagaccacct
catggcagctatccacgagataactatggccaaaaggtggatacctggtcaagaagaaaa
agcaacgacttccgcggtactgcagggcctcaaagaggcagagaccctaagagaaacgga
tag
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