Desulfosporosinus meridiei: Desmer_4511
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Entry
Desmer_4511 CDS
T02207
Name
(GenBank) RNA polymerase, sigma 54 subunit, RpoN/SigL
KO
K03092
RNA polymerase sigma-54 factor
Organism
dmi
Desulfosporosinus meridiei
Pathway
dmi02020
Two-component system
dmi02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
dmi00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Desmer_4511
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Desmer_4511
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dmi03021
]
Desmer_4511
Transcription machinery [BR:
dmi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Desmer_4511
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_6
TetR_N
Sigma70_r4
HTH_23
HTH_IclR
Sigma70_r4_2
HTH_Crp_2
LacI
HTH_3
HTH_38
MarR_2
MarR
Phage_CII
UBA_HYPK
HTH_AsnC-type
HTH_5
HTH_21
HTH_AraC
Motif
Other DBs
NCBI-ProteinID:
AFQ46316
UniProt:
J7J5Y1
LinkDB
All DBs
Position
complement(4719132..4720535)
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AA seq
467 aa
AA seq
DB search
MRLGYGLSLEQTQKLIMTPELRQAITILQLSALDLSTYVEEQLLENPLLENLEESMDSKV
EAEPPAVVEESPATDKWEVDWQDYVHDQDENRVRQERVITEDKQRFDPFVAAAPTLLEHL
LEQLHVQKVTCSLEVAEYIVGNLNEKGYLTVSIEDVAREMDVSQGEAEKALAAVQSLDPL
GVGARNLEECLLLQLPILPDCPPELPEFIKHLEDLAAGRLQRIAHSLKISLSRVQELADF
IRKLDPKPGLRFSGPGEVRYIVPDVVIEEIEGEFIILVNDITVPRLGVNKAYRDALSQEE
GSDTRKFVEQKLNAAAWLIRSIEQRRLTLYKVADAIVKWQSDFLRNGIRHLRPLTLRDIA
EEIGVHESTVSRATAHKYVQTPRGVFEFKFFFANSMGRGNNNDSGVTTDVIKLVLRDIIA
SENPKSPYSDQKLAEMLKARDMEISRRTVAKYRDELGIGATSVRKRY
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
gtgcggttaggatatggtctgagtctcgagcaaactcaaaaactcattatgactccagag
ttacggcaagcaattactattttgcagttgtccgcacttgacctttccacgtatgttgag
gaacagcttttagagaatcctttactggagaatctagaggaaagtatggacagtaaggtt
gaagcggagccacctgcggtagtggaggaaagcccggccactgataaatgggaagtagac
tggcaggactatgtccatgatcaggatgaaaatagggtgcgccaagaaagagtgatcacc
gaggacaaacaacggtttgatccttttgtggcagctgcgcctactctgttagagcatttg
cttgaacaactgcatgtccaaaaagtcacatgttctttagaagtcgccgagtatattgtt
gggaatttgaatgaaaagggatatctcacagtctctatcgaggatgtagctcgtgaaatg
gatgtttcacagggtgaggcggaaaaagcactggcggctgttcagagtctggatcccttg
ggcgttggggctcggaatctagaggaatgtttattgctccaattaccaattctgcccgac
tgtccacctgaactaccagagtttattaaacatctggaagatttagcggcaggacggctg
caacgaattgctcattccttaaaaatttctttaagtagggttcaagagttagctgatttt
atccgaaagctggatccaaagcctggacttcggttttcaggccctggtgaagtacggtat
atcgttccggatgtggtcattgaggagattgaaggagagtttataatcctggttaatgat
atcactgtccctcgtttaggggtgaataaggcttaccgagatgccttatcacaggaggag
ggaagtgacacacgtaaatttgtggaacaaaaactaaatgcagctgcttggctcattcga
agcattgaacagcggcgtctcactctctataaagtcgcagatgccattgttaagtggcaa
agtgatttccttcgtaatggaattcgtcatctaagacccctcacgctaagagatattgcc
gaagaaattggagtgcatgagtcaacagtcagcagagcaactgctcacaaatatgtccaa
actccccggggggttttcgaattcaaattcttctttgccaacagtatgggtcgaggtaat
aataatgactccggggtaaccacggatgtgattaaactcgttctgcgtgacatcatcgct
tcggaaaatcctaaatctccctattccgatcagaaactagcggaaatgctcaaggctaga
gacatggaaatttctcgacgcacagttgccaagtatcgagatgagctaggtattggagca
acttcggtgaggaagagatattag
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