Daphnia magna (water flea): 116915352
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Entry
116915352 CDS
T07514
Name
(RefSeq) ATP-dependent RNA helicase DHX8
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
dmk
Daphnia magna (water flea)
Pathway
dmk03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dmk00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116915352
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dmk03041
]
116915352
Enzymes [BR:
dmk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
116915352
Spliceosome [BR:
dmk03041
]
Complex C
Other components
Step II factors
116915352
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
S1
HA2_N
DEAD
AAA_22
AAA_19
nSTAND3
T2SSE
AAA_30
FkbH_N
Sigma54_activ_2
PhoH
FMP27-BLTP2_C
Flavi_DEAD
Motif
Other DBs
NCBI-GeneID:
116915352
NCBI-ProteinID:
XP_032776341
LinkDB
All DBs
Position
LG2:complement(5659243..5663296)
Genome browser
AA seq
1225 aa
AA seq
DB search
MDELEKLEHLSLVSKVCTELENHLGLNDKDLAEFIIALAEKHKTFDDFKTVMIENGAEFS
DSLIANLLRLIKHMKSANSKTTDVNLAEVKKTVFSAEVEKKRELFPGLALADNPKARTML
EEDIKPTIKDVEEADDLMAELEAMAPKEGKVSSETLKPSHDKAKRSRSRDRKERSKRSRS
KDRSRRSRSRDRSRRSRSRDHSRRSRSRDRSRRSRSRNRSHRSRSKDGGDRHRGNDRFED
KRGKDDRREKKPQKDFPENAEVGNVYAGKVMNLAAFGCFVQLEGIRKKCEGLVHISQLRR
EGRVNSVAEVVNRGDKVYVKVMSIAGQKISLSMKDVDQDSGEDLNPAPSTSSRPGLTSHE
SETALRNPDRPLSLLDLKTNVEEDELTNRKRVQRISSPERWELKQMMAANCIDKMDLPEF
DEETGLLPKLAEDEEDIEIELVEEEAPFLRGHGRVLNELSPVRIVKNPDGSLAQAAMMQG
ALSKERREQKMLLREEQEAADAPAQGANKSWIDPMPDAGAAPSTSLGRGTGAPVYDMPEW
KKHITGGPKGASFGKKTSLSIVEQRQSLPIYKLRDELIKAVSDNQILIVIGETGSGKTTQ
ITQYLSESGFTARGKIGCTQPRRVAAMSVAKRVSEEFGCRLGQEVGYTIRFEDCTSPETL
IKYMTDGMLLRECLIDPDLQTYSCIMLDEAHERTIHTDVLFGLLKQAVQKRAELKLIVTS
ATLDAVKFSQYFFEAPIFTIPGRTFPVEILYTREPETDYLDASLITVMQIHLNEPPGDIL
LFLTGQEEIDTACEILYERMKSMGPDVPELIILPVYSALPSEMQTRIFEPAPPGSRKVVI
ATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGMDSLVVTPISQAQAKQRAGRAGRTGPG
KTYRLYTERAYRDEMLATPVPEIQRTNLASTVLQLKAMGINDLLNFDFMDAPPVESLIMA
LEQLHSLSALDDEGLLTRLGRRMAEFPLEPSLSKMLIMSVHLMCSDEILTVVSMLSVQNV
FYRPKDKQQLADQKKAKFNQAEGDHITLLAVYNSWKNNKFSSAWCYENFVQMRTLKRAQD
VRKQLLGIMDRHKLDVVSAGKNTARVQKAICSGFFRNAAKKDPQEGYRTLVDGQVVYIHP
SSAIFNRQPEWVVYHELVQTTKEYMREVTVIDAKWLVEFAPAFFRFSDPTKLSKVKRNQR
LEPLYNKYEEPNSWRISRQRRLRRN
NT seq
3678 nt
NT seq
+upstream
nt +downstream
nt
atggatgaattagagaaactcgagcatctatccctggtttctaaggtttgtacggaattg
gaaaaccacttggggcttaatgataaggatctggccgaatttattatcgccttggcagaa
aaacataaaacgtttgatgacttcaaaaccgtgatgattgagaatggtgcggaattctcg
gattcacttattgcaaaccttcttcggctcatcaagcatatgaaatcagctaattccaaa
acaactgatgtgaatttggctgaagttaaaaaaacagtcttcagtgcagaggtggagaaa
aaacgtgaactgtttccaggtcttgctttagcagataatccaaaagcaaggaccatgctt
gaagaagatattaagccaaccataaaagatgttgaagaagcagatgatttaatggctgaa
cttgaagcaatggctcccaaagaaggaaaagtttcttctgagacactcaagccaagccat
gataaggcgaaaaggtctcgcagcagagacagaaaagaaagaagtaagcgttctagaagc
aaagatcgcagcaggagatcaagaagtagagatcgcagcagaagatccagaagcagggat
cacagcaggagatccagaagcagagaccgcagcagaaggtctagaagtagaaacagaagc
cacagatccaggagcaaagatggaggagacaggcacaggggaaacgaccgttttgaggat
aaaagaggcaaagatgaccgaagagaaaagaaacctcaaaaagatttcccagagaacgca
gaagtgggaaatgtctacgcaggaaaagtcatgaatcttgctgcatttggatgctttgta
cagctggaaggaataaggaaaaaatgtgagggtttggtacatatctcccagttgcggcga
gagggtcgtgtaaatagtgtggcggaggttgtcaatcggggagataaagtttatgtcaag
gttatgagcattgctggccaaaaaatttccctttcaatgaaagatgtggatcaagattcg
ggcgaagatttgaacccagccccgtcgacatcaagccggcctgggctgacaagccacgaa
agtgaaacagctctgagaaatccagatcgacctttatctttattggatctgaaaacaaat
gtggaagaggatgaactgacgaaccgcaaacgtgtgcaacggatttcgtcaccagaacgc
tgggaactgaaacaaatgatggcagcaaattgtatcgacaaaatggacttacctgaattc
gacgaagaaacgggcctgctcccaaagcttgcagaagatgaggaggacattgaaatcgaa
ttggtggaagaagaagcaccgtttctcaggggccacggtcgagtgcttaacgagcttagt
ccagtccgcattgtcaagaatcctgatggttctctggcccaagctgccatgatgcaaggt
gcactcagcaaagaacgccgtgaacagaaaatgcttctcagagaagagcaagaagcggca
gatgcaccggcgcaaggggcaaacaaaagttggattgatcctatgcctgatgccggcgct
gcaccttcaacgtcgttgggtcgcggaacaggggcacctgtctacgatatgcctgaatgg
aagaagcatattaccggtggtcccaaaggggcctcatttggtaaaaaaactagcctttca
atcgtggagcagcggcagtctctacctatctacaaactgagagacgagctaatcaaagcc
gtcagtgacaaccaaattctgattgtcatcggagagacaggctctggcaaaactacacaa
atcacccagtatctgtccgagtctggatttactgctcgtggaaagatcggttgtacacaa
cctcgtcgtgtggccgccatgtccgttgcaaaacgtgtctctgaagagtttggttgtcgt
ctcggtcaggaagttgggtacacgattcgtttcgaagattgtaccagtcccgaaaccctg
atcaagtacatgacagatggtatgttgcttcgcgaatgcttgatcgatcctgatcttcag
acgtattcatgcatcatgttggacgaagctcacgagagaactattcatacggacgttctc
tttggtcttctaaagcaagctgtccagaagagagctgaactcaagctaattgtcacatct
gcaactttggacgctgtgaaattctctcagtactttttcgaggcgcccatcttcactatt
cccggccgaactttccctgtcgagatcttgtatacgcgggaaccggagaccgactatttg
gatgcttcactcattacggttatgcaaattcaccttaacgaaccaccgggtgacattctt
cttttcttgaccggtcaagaagagatcgacaccgcctgtgagatcctctatgagcgtatg
aagtccatgggccctgacgtaccggagctcatcattcttcctgtctattctgccctgccg
tcggaaatgcagacgcgaattttcgaaccggcgccaccagggtcaagaaaagtcgtcatt
gctaccaacattgctgaaaccagtctgactattgacggcatttactatgtcgtcgatcca
ggttttgtcaaacagaaggtgtacaattcgaagacaggcatggactctttggttgtgacg
cccatctcacaagctcaagccaaacagcgagcagggcgagccggtcgtacgggacctgga
aaaacgtatcgattgtataccgagcgagcctaccgtgatgaaatgttggcaactcccgta
cctgaaattcaacgtaccaatcttgcctctacagtcctgcagcttaaagctatgggcatc
aacgacttgcttaattttgatttcatggatgcgcctcctgttgaatcgctcattatggca
ctcgaacagctgcattccctttctgctttggacgacgaaggattgctgacacgactcggt
cgacgtatggcggaatttcctctcgagccctcactttccaagatgctcattatgtctgtt
cacttgatgtgttcggatgaaattttgacagtggtgtcaatgttgtcagttcagaatgtc
ttctaccgacccaaagataagcagcaattagccgaccagaagaaagccaagtttaatcaa
gctgaaggagatcacatcaccttactggctgtgtacaattcctggaaaaacaataagttc
agtagcgcctggtgttacgagaatttcgtgcagatgcgtaccctaaaacgagcgcaggat
gtacgtaaacagctattgggtatcatggatcggcacaaattggatgtagtgtctgccggc
aagaatactgctagagttcaaaaagccatctgttccggcttcttccgtaacgcagcaaag
aaagacccccaggaaggctatcggacgctagtggacggccaagtggtctacattcatccg
agtagcgcaatctttaaccggcaacccgagtgggtcgtctaccacgaattggttcagaca
accaaagagtacatgcgtgaagtgactgtcatcgatgccaaatggctggtggagtttgcg
ccggcttttttcagattctctgatccaaccaaactcagcaaagtcaaaagaaatcaacga
ctcgagccactgtataacaaatacgaagaaccaaactcgtggcgtatttctcggcagcgc
cgtctccgccgaaactaa
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integrated database retrieval system
