Daphnia magna (water flea): 116915353
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Entry
116915353 CDS
T07514
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
dmk
Daphnia magna (water flea)
Pathway
dmk03020
RNA polymerase
dmk03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dmk00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
116915353
09124 Replication and repair
03420 Nucleotide excision repair
116915353
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dmk03021
]
116915353
03400 DNA repair and recombination proteins [BR:
dmk03400
]
116915353
Enzymes [BR:
dmk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
116915353
Transcription machinery [BR:
dmk03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
116915353
DNA repair and recombination proteins [BR:
dmk03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
116915353
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
DUF5817
Motif
Other DBs
NCBI-GeneID:
116915353
NCBI-ProteinID:
XP_032776342
LinkDB
All DBs
Position
LG2:complement(212797..216880)
Genome browser
AA seq
1174 aa
AA seq
DB search
MYDQEEDPIEDEDGEEISSELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVE
DSPAIDLQAEAQHSSGEVENPPRYVLKFEQIYLSKPTHWEKDGAPTAMMPNEARLRNLTY
SAPLYVDITKTVHKEGEEQVETQHQKTFIGKIPIMLRSTYCLLNGMNDRDLCELNECPLD
PGGYFIINGSEKVLIAQEKMATNTVYVFSMKDGKFAYKTEIRSCLEHSSRPTSTLYVNML
ARGGQGIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFEDPEMMEM
VKPSLDEAFVIQEQNVALNFIGARGARPGVTKEKRIKYAREILQKEMLPHVGVSDFCETK
KAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLMAFLFRALFKTLMKEVRMYAQ
KFIDRGKDFNLELAIKTRIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLS
HLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGAAVGLVKNLALMAYISVGSQPSP
ILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMATLRKLRRQMDIIVSE
VSMVRDIQDREIRIYTDAGRICRPLLIVENCKLLLKKRHVDMLKQREYINFSWQELVATG
VVEYIDTLEEETAMIAMSPEDLRQGKDAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSP
RNTYQSAMGKQAMGVYITNFHVRMDTLAHVLCYPQKPLVTTRSMEYLRFRELPAGINSVV
AILSYTGYNQEDSVIMNASAVERGFFRSVFFRSYKDQESKRSADQEETFEKPFRDHCQGM
RNAIYDKLDDDGIIAPGLRVSGDDVVIGKTITLPENDDDLESTTKKFSKRDASTFLRHSE
TGIVDQVMLTLNAEGNKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEG
LTPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLQEYGY
HLRGNEVLYNGHTGRKLNAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRAR
DGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNLCGIIAVANLRNNTFECKGC
KNKTQISQVRLPYAAKLLFQELMSMNIAPRLMVI
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgtacgatcaggaagaagatccaatcgaggatgaagatggcgaggaaatttcttcagaa
ctttggcaagaagcctgttggatcgtcatcaacgcatattttgacgagaaaggtcttgtg
cggcagcaacttgactcgtttgatgaatttattcaaatgtcagtacagagaattgttgaa
gattctcctgcaattgacctgcaagcagaagctcagcattcttctggtgaagttgaaaat
ccccccagatatgtactgaagtttgaacagatttacctttcaaaaccaacccattgggaa
aaagatggtgcaccgacggcgatgatgccaaacgaagccaggctcagaaacctcacctac
tctgccccgttatatgtagatatcacaaaaacagtacacaaagaaggggaagaacaggtt
gaaacccaacaccagaagacatttattgggaaaattcccattatgttgagatccacttat
tgcctgctgaacgggatgaatgaccgtgatttgtgcgagctaaacgaatgccccctcgac
ccaggtgggtatttcatcatcaacggttcagaaaaagtattgattgcgcaagaaaagatg
gcaacaaacacagtgtacgtcttcagcatgaaagatggcaagtttgcatacaaaacggaa
atccgttcctgcttagagcactcatcccgtccaacatccacgttgtacgtcaacatgttg
gctcgtggtggccagggtatcaagaaatctgccatcggtcaacgtattattgccatcttg
ccctacattaaacaagagattcctatcatgattgtattccgtgctttgggtttcgtggcc
gatcgcgacattctcgagcacatcatttatgactttgaagatcctgaaatgatggaaatg
gtgaaaccttcactggacgaagctttcgtcattcaagagcagaatgttgccttgaatttc
atcggagctcgtggtgcccggcctggtgtcaccaaagagaagcgtatcaagtacgcccgt
gagatccttcaaaaggaaatgttgcctcacgtcggtgtgtccgacttttgcgaaacaaag
aaagcctatttcctcggttacatggtgcatcgattactgttggctgccctagggcgtcgt
gagcttgacgatcgtgatcactacggaaacaaacgtctggatcttgccggtcctttaatg
gctttcctcttccgtgccctatttaaaacgttgatgaaagaagtgagaatgtacgcacaa
aaattcatcgacagaggaaaagatttcaacttggaactggccatcaagacacgaatcatc
acagatggccttcgatactctttggccactggcaattggggagatcagaagaaagctcat
caagctcgcgccggtgtatctcaggtgttgaaccgactgacgttcgcttcgactttgtca
catttacgtcgcctcaattcaccgattggtcgtgacgggaaactggccaaacctcgtcag
ttgcacaatacactttggggaatggtttgccctgccgaaacacccgaaggagctgctgtc
ggtctcgtaaagaacctggcattgatggcctacatttcagtcggttctcaaccatctccc
attcttgaatttttggaagaatggtccatggaaaatttggaagaaatcgctccgtcggcc
attgccgatgccaccaaaattttcgtcaacggctgttgggtcggcatccatcgtgatccg
gagcagctgatggcaaccctccgtaaactccgtcgtcagatggacattatcgtttctgag
gtgtcgatggtgcgcgacattcaggatcgtgaaatccgcatttacacggacgccggtcgc
atttgtcgtcctttattaattgtggagaactgcaaattgctgctgaagaagcgccacgtt
gacatgttgaaacagcgcgagtacatcaatttcagctggcaagaattggtggcgacggga
gtggtggagtacattgacacgttagaagaagagacggccatgattgcaatgtcgcccgaa
gatttgcgccagggcaaagacgcgtattgtacgacgtacactcattgcgagattcatccg
gccatgattttgggtgtttgcgcttccattattccgtttcccgatcacaaccagtcgcca
cgtaacacttaccaaagcgccatgggtaagcaagccatgggagtgtacattaccaatttt
cacgtgcggatggacacgctggcgcacgtcctctgctacccgcaaaagcctctggtgacc
acacgctccatggagtacctacgcttcagagagctgcctgccggcatcaattccgtggtc
gccattctcagctacactggatacaaccaggaagattccgtcattatgaacgcttcggct
gtggaacgcggtttcttccggtccgtctttttccgatcttataaagaccaggagtcgaaa
cgatcagccgatcaagaagaaacgtttgaaaagccattcagagatcattgccagggaatg
aggaacgccatttacgacaagttagatgacgacggcatcattgcgcccggtctccgcgtg
tctggtgacgacgtggtcattggtaaaacgattacgcttccggaaaatgacgacgatttg
gagagtacgacgaaaaaattctccaaacgagacgcttcgacgtttttgcgccactcggag
acgggcattgtggatcaagtgatgctgacgctgaatgccgaaggcaacaagttttgcaag
atccgcgtgcgttcggtccgcattccgcagattggcgacaaattcgcctcgcgtcacgga
cagaagggcacgtgcggtatccaataccgtcaagaggacatgcccttcacttgcgaagga
ttaactcccgacatcatcatcaacccgcacgccatcccttcccgcatgaccatcggccat
ttgatcgaatgccttcagggcaaagtgtctgcaaacaagggcgaaataggcgacgccact
ccattcaacgacgctgtcaacgtgcaaaaaatctccaatctcctgcaagagtacggctac
cacttgaggggcaacgaggtgctctacaacggccacacgggccgtaaactgaacgcccaa
gtctttctcggcccgacctactaccaacgcctcaagcacatggtggacgacaaaatccac
tctcgtgcccgcggcccagttcagatcctcgtccgacagcctatggaaggtcgtgcacgt
gacggcggtctccgtttcggcgaaatggaacgagattgtcaaattgctcacggagcggcc
cagttcttacgcgagcgtctgtttgaagtctctgatccctaccgaattcacgtgtgcaac
ctgtgcggcatcatcgccgtggccaatttgcgaaacaacacgttcgagtgcaaaggctgc
aagaacaagacgcaaatctctcaagtccgactcccttatgcggccaagctccttttccag
gagctcatgtcaatgaacattgctcctcgtttgatggtcatttaa
DBGET
integrated database retrieval system
