Daphnia magna (water flea): 116915637
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Entry
116915637 CDS
T07514
Name
(RefSeq) LOW QUALITY PROTEIN: replication factor C subunit 1
KO
K10754
replication factor C subunit 1
Organism
dmk
Daphnia magna (water flea)
Pathway
dmk03030
DNA replication
dmk03410
Base excision repair
dmk03420
Nucleotide excision repair
dmk03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dmk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
116915637
03410 Base excision repair
116915637
03420 Nucleotide excision repair
116915637
03430 Mismatch repair
116915637
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dmk03032
]
116915637
03400 DNA repair and recombination proteins [BR:
dmk03400
]
116915637
DNA replication proteins [BR:
dmk03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
116915637
DNA repair and recombination proteins [BR:
dmk03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
116915637
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
PTCB-BRCT
Rad17
Zeta_toxin
AAA_assoc_2
AlkZ-rel
RuvB_N
AAA_5
Motif
Other DBs
NCBI-GeneID:
116915637
NCBI-ProteinID:
XP_045031925
LinkDB
All DBs
Position
LG1:2789602..2796410
Genome browser
AA seq
1084 aa
AA seq
DB search
MPPKSPRTAQVKGDIRNFFTSISSKTSTSKSPGSAPASKEEDGGKRKKKAMVLVDSTDSE
SEAPSRSSVSTKKSKLDEKPKKESAATTKPKMKTSIPETPLQPVDISSVFGSKPIKREVP
EKRKRTVIEDHDDEDFEATLQQLDEAPLTKKSKVLENSTSTKRKPDSPAKKEKTKSPVKE
GKSKSPAKEEKNKPSASPPSRNGKKSSKESTRVEMKKETVSDKKRKTRDEAATPKKNTPT
KDVKQSEGRDKRSKKELEEFDSNSNETSPPKSNKKIKPEPTVVKETPKKRSASQDDDPDV
IDSPAFDAIEKRKEKAENYKRFLASRRDGGAKNPGSKPIPEGAPGCLTGLTIVVTGVLES
LHREEAEGLVKKYGGKAPKAVSKNTSYLLAGDDAGPSKLAKAQSMNVPIISEDDFLKMIG
TRKAAQGLSSPAAKKGPTTPKSVHKATTSKNIKSEPEPLITSVATPTKKRSPETKKIDSK
PKASSSTTPSKKVEADRKQSDESEGKDEVKLPWVDKYKPTNLKQVIGMHGDRSIAKKLLY
WLKSWYDNRSSSKKLTKPSPWSTNDDGAYFKAALLSGSPGIGKLTTAHLTAKELGYDIVE
MNASDTRSKRLLHEHVQELMSSQSLATYAHGSAQIQGGRKRVLIMDEVDGMAGNEDRGGV
QELIGLIKTSKIPVICICNDRQHPKIRSLANYCYDLKFSKPRLEQIRGAMMSICYKEGIS
LKPEALDEIIIGANQDVRQILHHLSMLASDKSVSNEKAKLEASKSKKDMKLGPWEVVKKV
FSAEEHRGMSIHDKTGLFFQDYSFGPLFVQENYPYVVPHAAKGNAIKTLDLLGRTAHCMS
QTDLIEKVIRSQNAWSLLPVEAVFASVVPGQLMEGFISSQVAFPSWLGKNSRTNKMDRLL
QELQMHMRLKICGSKRAVNLDYLPHVLNSIVGPLKRSGADGVAEAISAMESYDLMREDLD
SLLELAQWPHKPDIMAGIEGKVKAAFTRAYNKEGHMTPYAVVQVKKGRSKDTADDQEALV
DEEGLAEEDDDEEQSEIHRLDAMIKVKKETKKTAAAAVTGKKKAPSATRGRGGGSRGGRK
KAAE
NT seq
3255 nt
NT seq
+upstream
nt +downstream
nt
atgcctcccaaaagtcccagaactgcacaagttaaaggagacattcgaaactttttcacg
tcgatctcctcaaaaacatccacgtccaaatcacctggatctgctccagcttcaaaggaa
gaagatggtggcaagaggaagaagaaggctatggttcttgttgactctacagattcagaa
tcagaagcaccgtctcggtcatctgtgtccaccaagaagtcaaaattggatgaaaaacca
aagaaggaaagtgctgccaccacaaaacccaaaatgaaaacttcgatacctgaaacccca
ctgcaacctgttgacatcagctcagtgtttggcagtaagcctatcaaaagggaagtccca
gagaaaaggaaacgaacagtcattgaagaccatgatgatgaagattttgaagccactctg
cagcagttggatgaagccccattaactaaaaaatcaaaagtacttgaaaatagtacaagc
acaaagagaaaacctgattctccagcaaaaaaggaaaaaaccaagtctcctgtgaaagag
gggaaatccaagtctcctgcaaaagaggagaagaacaaaccgtctgctagtcctccttcc
agaaatgggaaaaagtcttcaaaagaatcgacgagagtagaaatgaaaaaggaaacggta
tcagacaagaagaggaaaactcgcgatgaagcagcaactccaaaaaagaacacccctaca
aaggatgtcaaacaaagtgaaggaagagacaaaagatccaaaaaagagcttgaagaattt
gactctaattcaaatgaaacttcaccaccaaagtcaaacaaaaagattaagccagagcca
acagtcgtcaaagaaactcccaaaaaaagatctgcaagtcaagatgatgatccagatgtc
atagactcaccggccttcgatgcaatcgaaaaacggaaagaaaaagctgaaaattacaag
agattcctggcatctcgtagagatgggggagcgaaaaatcccggcagtaaacctatacca
gagggagctcctggatgtctgacgggattgaccattgtcgttacgggcgttttggaatcc
ttacatcgtgaagaggccgaagggcttgtcaagaaatatggcggcaaagcgcctaaagct
gtcagcaagaatacgtcatatctattggccggagatgatgcgggtccctctaagctggcg
aaagctcaaagtatgaacgtgcccatcatcagcgaagacgattttctgaaaatgattggc
acgaggaaagcggctcaaggtttaagttctccggccgccaaaaaaggacccactacaccg
aagagtgtccataaagccacgacgtccaaaaacattaaatcggaaccagagcctctcata
actagtgttgctactccaaccaaaaaaagatcacctgaaaccaagaaaatcgattcgaaa
ccaaaggctagtagcagcactactccatccaagaaggtggaagccgatcgcaagcagtca
gatgaaagtgaaggaaaggatgaagtcaaactgccttgggtcgacaaatacaaaccaacc
aacttgaaacaagtgataggaatgcacggagaccggagcattgctaaaaaactgctttac
tggttgaaaagctggtacgataaccgcagtagtagcaagaaactcaccaaacctagtccc
tggtcgaccaatgacgatggagcctacttcaaagccgctttactctccggctcacctggc
attggaaaactaacgaccgcccatctgacggccaaggagctaggctacgatattgttgaa
atgaacgcgtcggatacgcgtagcaaacgtctgctgcacgagcacgtgcaggaactgatg
tcatctcaatcgttggcgacgtacgctcacggttcagcacagattcaaggtggccgcaag
cgagtgctcatcatggacgaagtggatggcatggcgggtaatgaggaccgcggcggtgtc
caggaactgattggtctgatcaaaacatcgaaaatcccagtgatttgcatatgcaatgac
cgccagcatccgaaaatccggagcttggccaattattgttatgatctcaaattcagtaag
ccgaggctggagcaaattcgaggcgccatgatgagcatttgctataaggaaggcatcagc
ttgaaacctgaagctctcgatgagatcatcataggggccaatcaggatgtccgccaaatt
ctccaccacttgtcgatgctggcctccgacaagagcgtgtccaacgagaaggccaaacta
gaagcgtccaagagcaaaaaggacatgaaattgggtccttgggaagtcgtcaagaaagta
ttctccgccgaagagcatcgcggaatgagcatccatgacaagacgggcctcttctttcaa
gattacagtttcggtccgttgtttgtccaggagaattacccgtacgtggtgcctcatgcg
gctaaaggcaacgctatcaagacgttggacctgttaggacgtacggctcactgcatgtct
cagacggacctgattgaaaaggttatccgctcgcagaatgcgtggagtctgctgcccgtc
gaagctgtttttgccagcgtcgtgcccggtcagctgatggaaggtttcatcagttctcag
gtcgcgtttcccagctggttgggcaagaattcccgtactaacaaaatggaccgtctgttg
caagagcttcagatgcacatgcgccttaaaatctgcggatcgaagcgggccgtcaacctg
gactacctaccacacgttctcaactcgatcgtcggacctttgaagcgatcgggagccgac
ggggtcgctgaggctatcagcgccatggaaagttatgatctgatgagagaggatctcgac
tcgctccttgagctcgctcaatggcctcacaaacccgacatcatggccggaatcgaaggt
aaagtgaaggcggcctttactcgagcctacaacaaggagggccacatgacgccgtatgcc
gtcgtccaagtgaagaaaggacgatcgaaagacacagccgatgatcaagaagccctcgta
gatgaggagggattggccgaggaggacgacgatgaggaacagagcgaaatccatcgcttg
gacgcgatgatcaaagtgaagaaggaaacgaaaaagacggccgcagcagcagtaacgggt
aagaaaaaagctccatctgccaccagaggtcgaggtggaggcagtcgaggaggacgcaag
aaagctgctgaataa
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