Daphnia magna (water flea): 116916094
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Entry
116916094 CDS
T07514
Name
(RefSeq) RB1-inducible coiled-coil protein 1
KO
K17589
RB1-inducible coiled-coil protein 1
Organism
dmk
Daphnia magna (water flea)
Pathway
dmk04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
dmk00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
116916094
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
dmk01009
]
116916094
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
dmk04131
]
116916094
03029 Mitochondrial biogenesis [BR:
dmk03029
]
116916094
Protein phosphatases and associated proteins [BR:
dmk01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
116916094
Membrane trafficking [BR:
dmk04131
]
Autophagy
Autophagosome formation proteins
ULK complex
116916094
Mitochondrial biogenesis [BR:
dmk03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
116916094
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATG17_like
ATG11
TBK1_ULD
ubiquitin
REF
DUF7674
Motif
Other DBs
NCBI-GeneID:
116916094
NCBI-ProteinID:
XP_032777168
LinkDB
All DBs
Position
LG2:complement(13303526..13308173)
Genome browser
AA seq
1141 aa
AA seq
DB search
MLYVFLVDTGTTLTFDMNLALETVANLKEVVYKACKIAPDKQVLLISGGQSLDPSYRVCS
YSAGTDTNPIFLFCKSTIESAVPPSPSMDFGSAHDLKQKAEACLNDKETTYQTVVTRVQL
AQQFHETGREICRVCEQLVHDQHMQQQGWSAVVANLEDVVADFKGRTQLFEQTYQHYLSS
REDNLDILSHFGEDLSALADIPVLPCLLNQAQEMQLLDWVHSTDDEDTNLNVVADSCTKA
LEQMDHQLLQALEKHIETALFAAERPEMKEIGGLGERLYGLEQLLIEARKKVQEQGDIAQ
ALLQNQQRARNFNDASVLPELCTSHRHQLKVMLKNDEKLRDIRSRCSRAKEELSTNLHSR
LRWMMFVQRQLSEVHERLNLQNENLRRLRRHFDLLRQLHQAPSIYLRSMVEIVRRKHFST
KFIEWAETLSGYARIVHQDEASLRKSFIETCEGHFLTQLFPGIVEQFSPSFATSPPSPFD
TNLPPVSVDDLERLKNALPTLWARLQLPGNLKEVLRNPPVLERLHSSAQKLLTPTELQIE
TGVLPSLSAALLSPPVRSGRSKVKRSQSDFHSDYQAEDSSDSLRRCRDDTGLELQQQLEE
TVKSQRCRLLALQSHLQCALEAGQAALPAFRTEMDSIRKLTLEWSDVANEQLARLRSEFT
QQIIKLFASEESASLAMLDEAQSQNKKLGDEKEKLQEDLMVVRLELDKWKKQCVEWQEEK
KSLVASAQLRLQQREEELEQQRLEQLNQQKLEHKKTIQTLQEAVKVAEEKYQVVVSDWQS
ASEQENPDALRAWKQELMLGHEVELEQLKLEKDSELNGLLELHNQMSVPDASEWKKKYEQ
LLKENEAQKLQIQEECQRKHRLEIEGLRSRFRMMASQSPSDCRSRSDSLDKFELRTTPPA
SPSNLVNAKRVPESHTDELLLPLVEKLKKEKDKLSTLVESYTTHYKTSNTKPTKWEATLS
EALKDSNQMMQSVGSKVDQLRQESTNLSNKPPLPFTTSISQISSANMAASVAVLQSDEKS
STSPLLPLKSSSKKKPMSKMTRSLVRQGSANVYGCEVGDAVVVQWDERYSTHILYNKGPY
LHFLHADSISALGLQNMTMEPFLARVIQREFCLVRKEENRYNLPKGTNFYRVKVDRVNNA
S
NT seq
3426 nt
NT seq
+upstream
nt +downstream
nt
atgctatacgttttcttagttgacacaggaactactctcacgtttgatatgaatttagct
ttggagacggtagctaatctcaaagaagtcgtctacaaagcctgcaaaattgctccagac
aaacaggttttactcatcagcggaggacagagtttagatccatcatatcgcgtttgcagt
tattcggcaggcactgataccaaccctatatttctcttttgcaagtcaactattgagagt
gctgtcccaccttcacccagtatggattttggctctgctcatgatttaaagcaaaaagca
gaagcatgtctgaatgacaaggaaacaacctatcaaactgtggttactcgagttcagttg
gcacaacagttccatgaaactggaagggaaatctgtcgagtttgtgaacagctagtccat
gatcagcacatgcaacagcaaggatggtctgctgttgtagcaaatcttgaagatgttgtg
gctgattttaaaggaaggacacaactatttgaacaaacataccaacattaccttagtagc
cgggaagataacctggatatccttagtcattttggtgaagaccttagtgcattggctgat
ataccagttttgccatgtttgctcaaccaagctcaagaaatgcaactgcttgactgggtg
cattctacagatgatgaagacacaaacctcaatgtagttgctgacagttgcacgaaagcg
cttgaacaaatggaccaccagttactgcaggctctcgaaaaacacatagaaactgcttta
tttgctgccgaaagaccagaaatgaaagaaattgggggattaggagagcggctttatggt
cttgaacagctgttgattgaagctagaaaaaaagtgcaggaacagggtgatatcgctcaa
gctcttttacagaaccaacaaagggctcgaaacttcaatgatgcttccgttctacctgaa
ttatgtacatcccatcgtcatcaactgaaggttatgttgaaaaatgacgagaaacttcgc
gatattcggagtcgttgcagccgtgcgaaggaagagttaagtacaaatttacattctcgt
cttcgttggatgatgttcgtccaacggcagttgtcggaagttcacgagcggttgaacctg
caaaacgaaaatttacgccgtcttcgccgacactttgatttacttcggcagctccatcaa
gcgccgagtatttatctgcgttccatggtagaaattgtccgacgaaagcatttctccacc
aagtttattgaatgggcagaaaccctctccggttatgcgagaatagtacaccaagacgag
gcatccctgcgcaagagttttattgaaacttgcgaaggacacttcttgacgcagctattt
cctggaattgttgaacaattctctccgtcttttgccacgtcacctccatctccgttcgat
actaatttacctccagtttcggttgatgatctagaacgtttgaaaaacgcgttgcccact
ttatgggccagattacaattacccggcaatttaaaggaggtgctgcgaaatcctcctgtt
ctagaacgtctccattcatcagcacagaagttgttaactccaacggaactccaaattgaa
accggcgttcttccaagcctctcagctgctttactttcgcctcccgttcgatcgggtcgt
tctaaagtcaagcgatcccagtctgacttccactctgattatcaagctgaagattcttct
gattcccttagacgctgtcgcgacgatactggactggaactccaacagcaactggaagag
actgtcaaaagccaacgctgccgattgttggcacttcagtcacacctacaatgtgcttta
gaggctggccaagctgcactccctgccttccgaacagaaatggattccattcgaaaattg
acgctagaatggagtgatgtagccaacgagcaattagctaggctgagatctgaatttacg
cagcagattattaagttgtttgcctccgaagaaagcgcttcactagccatgttggatgaa
gcccaatctcaaaacaaaaagcttggcgatgaaaaagaaaagctacaggaagacttaatg
gtggtcaggcttgagcttgacaagtggaaaaaacaatgcgttgaatggcaggaggaaaag
aagagcctggtcgccagcgctcagcttcgccttcagcaacgagaggaagagttagagcaa
caaagacttgaacaattgaatcagcaaaagcttgagcacaaaaagacaattcagacccta
caagaagcagttaaagttgccgaggaaaagtatcaggtcgtagtgagcgactggcaatca
gcttcagagcaggaaaatcctgatgcgttaagagcatggaagcaagagcttatgcttggc
catgaagtagaacttgaacaactgaaactggaaaaagattcggaactaaatgggctttta
gaacttcacaaccaaatgagcgttccagacgccagcgaatggaaaaaaaaatacgagcaa
ttacttaaagaaaacgaggcccagaaacttcagatacaggaagaatgtcaacgcaaacac
cgactggagattgaaggacttagatcgcggtttcgtatgatggcaagccaatctccgtcc
gattgtaggtcaagatccgattcattagacaaatttgaactgcgaacaaccccaccagcc
agcccgtccaatctagtgaatgccaagagagtaccagaaagtcacacagacgaactgtta
ctgccactagtcgagaagttgaagaaagaaaaagataaattgtcaacccttgttgaaagc
tatacaacccattacaaaaccagcaacaccaagcctacaaaatgggaggctacgctgtcc
gaagcgctgaaagattcgaaccagatgatgcaaagtgttggttcgaaagtagaccaactt
cgccaagagagtacaaatctctcaaacaaaccacctcttccatttaccacgtccatatcc
caaatcagttcggcaaatatggcagctagtgtggcagttttgcagtcagatgagaaatca
tcgacgagtcctttacttcctctgaaatcttcttcaaaaaaaaaacccatgagcaaaatg
actagatcacttgttagacaaggttcagcaaatgtttatggttgtgaggttggagatgct
gtagtcgtgcaatgggacgaacgatattcaacacacattttatacaacaaagggccgtac
ctacattttttgcatgctgattcaatatctgcgctcggactgcaaaacatgacaatggaa
ccttttttggctagggttatccaaagggaattctgccttgttcggaaggaggaaaatcgc
tataaccttccaaaaggaacgaacttctatcgcgttaaagtggatcgagtaaacaatgcc
tcataa
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