Daphnia magna (water flea): 116916317
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Entry
116916317 CDS
T07514
Name
(RefSeq) vacuolar protein sorting-associated protein 8 homolog
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
dmk
Daphnia magna (water flea)
Pathway
dmk04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
dmk00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
116916317
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
dmk04131
]
116916317
Membrane trafficking [BR:
dmk04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
116916317
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_VPS8
TPR_Vps8
VPS8_N
TPR_VPS8_2
zf-RING_Vps41
zf_RING_Vps8_fungal
WD40_CDC20-Fz
zf-RING_2
zf-rbx1
Beta-prop_WDR90_POC16_2nd
zf-ANAPC11
zf-RING_5
zf-RING_11
Motif
Other DBs
NCBI-GeneID:
116916317
NCBI-ProteinID:
XP_045024904
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All DBs
Position
LG2:complement(8368308..8373650)
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AA seq
1332 aa
AA seq
DB search
MSDNGELQPEVLAVSEEHAIVFENFSLEETASSIDLEVQNETWQLNSLDSSVSNSSDSEE
KLSISNSKQSSLPPTTCKQIEHGIILKQLVLKGISSQLMTAQAKLKSKEATCLTVSTWIG
IGTRNGLVLVFDVTQNLKWFLDTLDVLGTKYSSESPDGWGNAISAMAFNSEHSRLLVGNA
CGHILEYDMKDGKLVRTLNDVHPPEAAILHLQFTDLPTLALLCDSGGNVFELGFKRTLGV
RGVDTRCLFSGSRGEVCAIEPLRSVGQDLGAVFDFLPKWESVVVVAMATLSKILIVQIRP
STKVIYSQLLGGDGLSPPCLGWHFVAVHSQQRGRSIEPVLAYARHSELHFVQLSIDEERN
RVRYHPLLRFQLDFNLRGLQWLDPRMLALLDSEQQVHVVDIKTQESIDVVDVSGVNLVKS
TPFFRGLATGGNVSEALALVGTDACYNSMASCAGQLLLLCSTSLRSIGLRHWDERLDLLL
SQSQPEEAIHLGLRMLNGKAKAMHGLKGTPNQRKRQLKDKEVDILNDYVERVLVPLVMQE
PTMVTSGRNLKSVIELCIDVCIKLQQEALLFDQIYPRIANSEAARENFLQLLEPHFLNDR
LPSVPPSIMQQFVAHYEDNGWLDTLESCIIHVDVSCLDLHQILTLSHNQGLFLAYLYVHT
RALNDYVSPLEDLLKQLQGAVKLGPPYSEQDLKLGHVILVYISCCLAGRTYPVGEIDQES
RVKVKHQVLTSLTCLHSKRASDDEPPYPYLRALLEFNTQELLNALSLAFEESEFVGEMGA
RRQQRVIDILVEIMINSSQFSPDQICSLFTFIARQISRSPRPDSIYLDPNLFQQLVDLVC
SLSSKETHQVQSRFEERQQALLQLLQIKGQPSLGTEDEEQLLKQAESAKFYRVCEHIYEQ
RQDWEKVFECYINDTSRHGDILYFLRNVFSESSVVSDVCKIEQAVLKHIQLLVKLNATSL
AVFLAVNKPTLIDVAVTALIPFPRERYRFLEAILDLATQDDVATSTAVLIDDDDYCIEQY
AELMAELEPQRLASYVQLVDVIYLSRLLDICRKFSNLEAEAAVLERQGEITAAYDLLLGR
LQGCIQQLFVKPESWQDFETASQSIIDFCQRQASSLTEQEREKIWLTLLDELLLPQRSLK
ENPDASSTIISGLREVTQKVVTSIQGQISLSKVLPRLIEDPETTGGTLGDLRQLIMGLLD
NYTYETTLLRISTRLLQGDVHSLLSQRYRQSRKGVVLRASRCGSCNRPLQNGRNSSITAF
QCRHAFHSGCLLEEIKDCIVCQPIPTSAPPEDFTALNPEQLPVLQLTSIQLDSVAKARKG
LSSAYPLTNLFE
NT seq
3999 nt
NT seq
+upstream
nt +downstream
nt
atgtcagataatggagaactgcagccagaagtattggctgtatcagaagagcacgctatt
gtatttgaaaatttttcattggaggaaacagcatcttcaatagaccttgaagttcagaat
gagacctggcagttaaatagcttagattcatcagtttcaaactcaagtgatagtgaagaa
aaactttctatctcaaattctaaacaatcgtcattaccccctacaacatgcaagcaaatt
gaacatggcatcatacttaagcagcttgtattgaaaggaatttcatcacagctaatgacg
gctcaggccaaattaaaatccaaagaagcaacatgtctaacagtatcaacctggattggt
atcggcacaagaaatggcctagtgctagtgtttgatgttacacagaatttaaaatggttt
ttagacacattagatgtacttggaaccaagtactcaagtgagtctccagatggatggggt
aatgccatttcagcaatggccttcaactcagaacacagcaggttgttggttggaaatgct
tgtggtcatattttagagtatgacatgaaagatgggaagctagtcagaactttaaatgat
gttcacccacctgaagcagctattcttcacttacagtttacagatttgccaactcttgct
ctcctgtgtgacagcggaggaaatgtttttgagctcggttttaagagaacattaggagtc
aggggcgttgatactcgatgcctcttttcgggaagtcgaggcgaggtatgcgctatagag
ccattaagaagtgtcggtcaggatttgggcgccgtttttgattttcttcccaaatgggaa
tcggtagttgttgttgcaatggccacactttctaaaattttaattgtgcaaatccggcct
agtacgaaagttatctacagccaactgttaggcggtgatgggctaagccctccttgtctt
ggatggcattttgtggctgtccatagccagcaaagaggaaggagtattgaacccgttttg
gcttatgctcggcattctgagcttcattttgtccaattaagcatcgatgaagaacgtaat
cgtgtccgctaccatccgcttcttcgtttccaacttgattttaatcttcgagggttacag
tggctggatcctcgtatgcttgctttattagattcggagcagcaggtacatgttgtggac
ataaaaacacaagaatccatcgatgtcgtcgacgtatctggtgttaacttagtcaaatca
actccattctttcggggcctagctactggtggcaatgttagcgaagctctggcgctcgtg
ggaacagatgcatgttataattcaatggctagttgcgctgggcagttactattgctgtgc
tcaaccagcttgcgttctattggcctaaggcattgggatgaaagactggatctacttctt
tcacagtcacaaccggaagaggccattcatttaggtttacgtatgttgaacggcaaagcc
aaagctatgcacggattgaagggtacgccgaaccagcgcaagaggcaattgaaagataaa
gaggttgatatcctcaatgactacgtcgaacgggttttagttccacttgtaatgcaagaa
cctacaatggttaccagtggtcgaaacctaaagtccgtcattgaattatgcatcgatgtt
tgcattaaactgcaacaagaggctttgctgtttgaccaaatttatccaagaattgcaaat
tctgaagcagcccgtgaaaactttctgcagctgctagagccccattttctcaacgaccgt
ttaccatctgttcctccttctattatgcagcaatttgtggctcattatgaagataatggc
tggcttgacactctagagagttgcatcatacacgttgatgtttcctgcctggatcttcat
caaatattgacactgtcacacaaccaggggctatttcttgcctatctttatgtgcacaca
agggcacttaatgactacgttagtcccctagaagatctattgaaacaattgcaaggagct
gtaaaactaggtccaccttattctgaacaagatctcaagttgggccacgtgatactggtt
tacatttcgtgttgcttagccggtcgaacttatcctgtgggagaaatcgatcaggaatct
cgtgttaaggttaaacaccaggtcttgactagtctaacatgtctacacagcaaacgagct
tctgatgatgagcctccatatccttacttgcgcgccttactggagttcaatacacaagaa
ctactcaatgctctttcgctagcatttgaagagtcagaatttgtgggtgagatgggagca
agacgacagcaacgagtcattgacatcctggtcgaaatcatgattaattcctctcagttt
tcgccagaccagatttgctctttattcacatttatagcccgtcaaataagtcggtctcct
cgacctgattctatttatttagatccgaatctttttcagcaacttgtagatttggtatgt
tcgctgtcctcgaaagagactcatcaagtacagagcagatttgaagagaggcaacaagct
ctgcttcaattacttcaaattaaaggccagccatctttgggcacagaagatgaagagcag
ctacttaaacaagctgagtccgccaaattctatcgcgtttgtgagcacatctacgagcag
cgtcaagattgggaaaaggttttcgagtgctatattaacgacacctctcgccatggggac
attctgtactttctgcgtaacgttttctctgaatcttctgtcgtttctgatgtctgcaaa
attgagcaagccgttctgaaacatatccaactactagtcaaattaaatgcaacttcgtta
gcagtcttcttggctgttaacaagcccacattaattgacgtggcggttactgctctaata
ccttttcctcgagagagatatcgttttcttgaagctatcttagatttggcgactcaagat
gatgtggcaactagtacggctgttctcatagatgatgatgattattgtatagaacaatac
gctgaactcatggctgaacttgagccccagcgccttgctagctacgtccaactagtcgat
gtcatatatttatcacgtttattggatatttgccgcaaattttccaatctcgaagctgag
gcggcagtattagagcgtcaaggcgaaattaccgccgcctacgatttgttgttgggtcga
ctgcaaggctgcatccaacagctgtttgttaaaccagaaagttggcaggactttgaaact
gcctctcaatcgataattgatttctgccagcgacaggcaagctctttaacagagcaagaa
cgcgaaaaaatttggctgacactcctggatgaattgcttcttcctcaacgaagtttgaaa
gaaaatccagatgcttcttctactatcatctcaggtctaagggaagttacccaaaaagtt
gtgacaagcatccaaggtcaaataagcttaagtaaagtgttacctcgtctgatcgaggat
cccgaaaccactggtggtacgctaggcgatcttcggcaacttatcatgggccttttggat
aactacacatacgaaactacgcttttacggattagcactcgccttcttcaaggtgatgtt
catagtttactatctcagcgctaccgccagtcacggaaaggtgttgtgctgcgtgcttct
cgctgcggcagctgcaatcgtccattgcagaacggccgaaattcatcaattactgcattc
caatgtcgtcatgctttccatagcggctgcttactagaagaaattaaagattgtatcgtt
tgccagccgataccaaccagtgcacctccagaagatttcactgccctaaatccagaacag
ttgccagtgttgcagttgacgtccattcagcttgattcagtagctaaggctagaaaagga
ttatcctccgcatacccattgacaaatcttttcgagtga
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