Daphnia magna (water flea): 116916451
Help
Entry
116916451 CDS
T07514
Name
(RefSeq) ATP-dependent RNA helicase WM6
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
dmk
Daphnia magna (water flea)
Pathway
dmk03013
Nucleocytoplasmic transport
dmk03015
mRNA surveillance pathway
dmk03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dmk00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116916451
09122 Translation
03013 Nucleocytoplasmic transport
116916451
03015 mRNA surveillance pathway
116916451
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dmk03019
]
116916451
03041 Spliceosome [BR:
dmk03041
]
116916451
Enzymes [BR:
dmk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
116916451
Messenger RNA biogenesis [BR:
dmk03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
116916451
Spliceosome [BR:
dmk03041
]
Complex C
Other components
EJC/TREX
116916451
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
116916451
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Utp25_C
AAA_19
ARM_TT21
Motif
Other DBs
NCBI-GeneID:
116916451
NCBI-ProteinID:
XP_032777597
LinkDB
All DBs
Position
LG2:18903580..18906735
Genome browser
AA seq
425 aa
AA seq
DB search
MADNEDLLDYEDEEATEQVAVEGTGDAPAKKEVKGTYVSIHSSGFRDFLLKPEILRAIVD
CGFEHPSEVQHECIPQAVLGMDVLCQAKSGMGKTAVFVLATLQQLEMVENQVSVLVLCHT
RELAFQISKEYERFSKYMTTIKVGVFFGGLNIAKDEQTLKSNCPHIVVGTPGRILALVRS
KKLNLRTLKHFVLDECDKMLEALDMRRDVQEIFRNTPHEKQVMMFSATLSKEIRPVCKKF
MQDPMEVYVDDESKLTLHGLQQHYVKLKDNEKNRKLFELLDVLEFNQVVIFVKSIQRCMA
LCQLLGEQNFPAIAIHRSMTQEERLSRYQQFKDFKKRILVATDLFGRGMDIERVNIVFNY
DMPENSDSYLHRVARAGRFGTKGLGITFVSDENDAKVLNDVQERFDVSITPLPDEIDLSS
YIEGR
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atggctgataatgaagatcttttggattacgaagatgaagaggcgacggaacaagttgcc
gttgaaggaactggtgatgccccggcaaagaaagaagttaaaggcacatatgtatccatt
cacagctctggttttcgagattttttgctcaagccagaaattttgagggctattgttgac
tgtggttttgaacatccttctgaagttcagcatgagtgtattccacaagctgttttgggg
atggatgttttgtgccaagctaaatctggtatgggtaagacagctgttttcgtattggcc
acactccagcaactggaaatggttgaaaatcaggtttcggttcttgttttgtgccataca
cgagagctagctttccagatctcgaaggaatatgaacgtttctctaagtatatgactacc
atcaaggttggtgtattctttggtggtttaaatattgccaaagatgagcaaactttgaaa
tcaaattgcccccatattgtggtgggaacccctggtcgcatcctggctttggttcgttcg
aagaaacttaacctccgcacgctgaagcatttcgttcttgatgagtgtgacaaaatgctt
gaagctctagacatgcgtcgagatgtgcaggagattttccgcaatacacctcatgaaaag
caagttatgatgttcagcgccacgctgagtaaggagatccgccctgtctgcaagaaattt
atgcaagatccaatggaagtatacgttgacgacgagtccaaactcactcttcacggtctc
cagcagcactatgtcaaacttaaggataacgagaagaaccgcaaactatttgagcttctc
gacgtacttgaatttaatcaggttgttatattcgtcaaatccattcagcgttgcatggct
ctttgtcagttgctaggcgaacaaaacttccctgcgattgccattcatcgtagcatgacg
caagaggagcgtctgtctcgttaccaacagttcaaagacttcaaaaagcgtatccttgtg
gcaacggatttatttggccgtggaatggacatcgaacgtgtcaatattgtctttaactac
gatatgcctgagaattcagactcgtacctgcatcgtgtagctcgcgctggtcgtttcggg
actaagggtttgggtatcacatttgttagcgacgaaaacgacgccaaagttttgaatgac
gttcaagaacgcttcgacgttagcatcacgccgttgccagatgagattgatttatcgtcc
tacatcgagggacgctag
DBGET
integrated database retrieval system
