Daphnia magna (water flea): 116916459
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Entry
116916459 CDS
T07514
Name
(RefSeq) nuclear pore complex protein Nup54 isoform X1
KO
K14308
nuclear pore complex protein Nup54
Organism
dmk
Daphnia magna (water flea)
Pathway
dmk03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
dmk00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
116916459
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dmk03019
]
116916459
Messenger RNA biogenesis [BR:
dmk03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
116916459
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup54
Nup54_C
Crescentin
DUF7344
Nucleoporin_FG
Motif
Other DBs
NCBI-GeneID:
116916459
NCBI-ProteinID:
XP_032777602
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Position
LG2:11229187..11232286
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AA seq
609 aa
AA seq
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MSFPSGSLFQPAQSATSTTGGLFGGTGQTGTTTFGGFGAQQANTANQPFSFGTQQVNATP
ALGFGTQQTITTAAAPTFGFGTTQATSATPAFGFGAQTSTTPSFGFGGTQTSTAAPTFGF
GGTQTNTGAPTFGFGQPQTSNTGFGFGLGTPAASTSAGLFSGTGGGSFGTSLGSTGTAPS
GTSFSLGTPAFGSTAPSTGLFGQQAQSQPAPPAQQAGTQVESVLSSVLYCNVYGDERDAI
LARWNLLQAAWGTGKGFYSGTASAVQYTAENSLCRFKAIGYSKLPQGKNEDGIIVMLFNK
PETELRRDQAQLVSVITTALGNKPNLNVTVEGVSGLDINKTEVLICVQERSATGAIHKVP
AIELSSFLWNQQPPVMMQTARGQLSTLGVVSCVPRVRPTPEQLREYLASPPAGIDARIWK
QAQSENPDRDNFIPIPLIGFGDLVRHLHLQEKETRRHQGTLDKLAEELANLQSRASETSV
ALSEQRRRYIDLQHRILKVLIKQECSRKEGFALQPEEERLRVQLESVHNELSIPTQFRGR
LNELLSQIRMRQSAFMPAERMAERYNIEPNVLDDLKQVLKSQQEGMAQLMNVLKDDFNDL
LVLDNALKH
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttcctagtggatcccttttccaaccagcccaatctgctacatccactacagga
gggttgtttggaggaaccgggcaaactggtaccactacatttggaggatttggtgcacag
caggccaacacagcaaatcaacccttttcgtttggaacccaacaagtaaatgctacacca
gcactagggtttggcacccaacaaacaatcaccactgcagcagcacctacttttggattt
ggtactacacaggctacttcagcaaccccagcttttggatttggggcacaaactagcacc
actccttcttttggttttggtggaacgcaaactagtacagctgctcccaccttcggtttc
ggaggaactcaaaccaacactggagctccaactttcggctttgggcagccacagacaagt
aacacaggttttggttttggcctaggaacgcctgctgcttcgacgtctgctgggcttttt
tctggaactggaggtggatcattcgggacatctcttggaagtactgggactgctccatca
ggtacatccttttctttaggtacccctgcatttggaagcacagcaccttcaaccgggcta
tttggtcaacaagcacaatcccaacctgcccctcctgctcagcaagccggcacacaagta
gaatccgttctatcttctgtactttactgtaacgtttatggtgatgagcgagacgcaatc
ttggcccgttggaatctcctgcaagcggcatggggaacaggaaaaggcttttactctggc
actgctagtgctgtccaatatactgcggaaaattcattatgtcgttttaaagcaattggc
tatagtaaactaccgcaaggaaagaatgaagacggaatcatagtcatgctatttaacaaa
cccgaaacagaacttcgtcgagatcaagcccagttagtaagtgtcataactacagcattg
ggaaacaagccgaaccttaacgtaaccgtggagggtgtttcggggttggacataaataaa
accgaagtcttgatctgtgttcaagaaagatcagcaaccggcgccatccacaaggtacct
gctattgagctgtcttcgttcctgtggaaccagcaaccaccagtcatgatgcaaacggct
cgtggtcaactcagcacgctcggcgttgtttcctgtgtcccaagggtgcgaccaacgccc
gaacaactgcgagaatatctggcgtctcctccggctggtatcgatgctcgaatttggaaa
caagcgcagtcggaaaatcctgatcgggataatttcatacctataccactgattggattt
ggcgatcttgttcgccatcttcatcttcaggagaaggaaactcgtcgacaccaaggaaca
ttggataaattagcagaagaattagctaacctgcaatcgcgagcatctgaaacatcagta
gcgctaagtgaacagcgacgacgatacattgacttgcagcatcgaatccttaaagttctt
ataaaacaagaatgctcacgaaaagaaggtttcgccctgcaaccagaagaagaacgatta
agagtgcaactcgagtctgtgcacaacgaactcagtatccctacgcagtttagagggcga
ttaaatgaattgctttcacaaattaggatgcgacaatctgcatttatgccagcagaaaga
atggcagaacggtacaacatagaaccaaatgtcttggatgatttaaaacaagtactgaaa
tcacagcaagaaggaatggctcagctgatgaacgtgctgaaagacgatttcaacgattta
ctcgtcttagataatgctttgaaacattaa
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