Daphnia magna (water flea): 116917028
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Entry
116917028 CDS
T07514
Name
(RefSeq) LOW QUALITY PROTEIN: putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
dmk
Daphnia magna (water flea)
Pathway
dmk03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dmk00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116917028
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dmk03041
]
116917028
03009 Ribosome biogenesis [BR:
dmk03009
]
116917028
Enzymes [BR:
dmk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
116917028
Spliceosome [BR:
dmk03041
]
Complex A
U2 snRNP components
U2 related factors
116917028
Complex B
116917028
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
116917028
Ribosome biogenesis [BR:
dmk03009
]
Eukaryotic type
90S particles
Helicases
116917028
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
SRP54
AAA_22
AAA_19
nSTAND3
ResIII
ABC_tran
DNA_pol3_delta
AAA_7
Flavi_DEAD
AAA_30
TsaE
AAA_23
AAA_29
Motif
Other DBs
NCBI-GeneID:
116917028
NCBI-ProteinID:
XP_032778269
LinkDB
All DBs
Position
LG2:18683485..18687420
Genome browser
AA seq
734 aa
AA seq
DB search
MSKRRIEVDDKLSKKSRASGERNRDNDVDKEKNVIETKPNISSATTVPAAKPGLTLNPLT
GLPYTQKYYDIYRKRIALPVWEYRDKFFELLENNQTIVLVGETGSGKTTQIPQWSAEFTR
KLGVKKGVACTQPRRVAAMSVAQRVADEMDVVLGQEVGYSIRFEDCSSPKTILKYMTDGM
LLREAMSDPLLDSYQIVLLDEAHERTLATDILMGVLKEVIKQRHDLKLVIMSATLDAGKF
QSYFDNAPLMNVPGRTHPVEIFYTPEPERDYLEAAIRTVMQIHMCEDIVGDVLLFLTGQE
EIDEACKRLKREIDNLGPEVGEMKCIPLYSTLPPNLQQRIFESAPPVRPNGAIGRKVVIS
TNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGK
CFRLYTEKAYKQEMQDNTYPEILRSNLGSVVINLKKLGIDDLVHFDFMDPPAPETLMRAL
ELLNYLGALDDDGNMTELGAIMAEFPLDPQLAKMLIASTEFNCSNEILSITAMLSVPQVF
MRPLEAKKAADEAKMRFAHIDGDHLTMLNVYHAFKQNMEDPQWCYDNFVNYRSMKSADNV
RQQLSRIMDRFNLKRTSTEFTSKDYYVNIRKALISGFFMQIAHLERTGHYQTIKDNQVVQ
LHPSTCLDHKPEWVIYNEFVLTTKNYIRTCTDVKPEWLIKVAPSYYDMSNFPEGPAKRQL
EQIINRLESREYRN
NT seq
2205 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaaaggcgcattgaagtcgatgacaagctcagtaaaaaatctcgagcatctggt
gaaaggaatagggataatgacgttgataaggaaaagaatgttatagaaacaaagcccaac
atttcttcggcaacaactgtaccagcagccaagccaggactaacattaaatccacttaca
ggtctaccctacacacagaagtactatgacatttatcggaaacggattgcacttcctgtg
tgggaatatagagacaagtttttcgagttgttggaaaacaatcaaactatagttttagtt
ggtgaaacaggatcaggaaaaactactcaaattcctcaatggtctgctgagtttactcgg
aaattaggagtaaaaaaaggagttgcttgtactcaaccacgccgagttgctgcaatgtcc
gtggctcaacgtgttgccgacgaaatggacgttgttttgggacaagaagttggttacagc
atccgtttcgaagattgctcctcacctaaaactatactcaagtacatgaccgacggtatg
ttgttgcgtgaggctatgtcagatccgctgttagactcataccaaattgtcttattggat
gaagctcatgagcgcacacttgccaccgacattcttatgggtgttttaaaggaagtcatt
aaacagcgccatgatctaaaattagttatcatgtctgcaacactcgacgcgggaaagttt
cagtcttatttcgacaacgccccactgatgaatgttcccggtcggacacatcccgttgaa
atcttttacacaccagaacccgaacgggactatcttgaggctgctattcgcacggttatg
cagattcatatgtgtgaagatatcgttggtgatgttcttctgttccttactggtcaagag
gaaatcgatgaagcgtgtaagcggttgaaacgtgaaattgacaacctgggacctgaagta
ggagaaatgaaatgtattcctttgtattccacgttgcccccaaatttacagcaaaggatt
ttcgagtcagctccaccagtcagacccaatggtgccatcggtcgtaaagtggttattagc
acgaatattgccgagacctctcttactattgatggcgttgttttcgttattgaccctggt
tttgctaaacagaaggtgtataatcctcgcatccgcgttgagtccctactggtttctccc
atcagcaaagcatcagcccaacaacgtgccggtcgtgccggtcgtactcgaccaggaaag
tgtttccgtctatacaccgagaaggcatacaaacaagagatgcaagataacacatatcca
gaaattctacgctctaacttgggatccgtcgtgattaatctgaaaaaattgggcatcgac
gatttagtccattttgattttatggatcctccagctcctgagactttgatgagagcgctg
gagttactgaattatcttggagctttggatgacgatggtaatatgacggaactgggagct
atcatggcggaatttcctttagatcctcaactggccaaaatgttgattgcctctaccgaa
ttcaattgctccaacgaaattctttctattactgctatgctttccgtcccacaagtcttc
atgcgccccctggaagcaaagaaagctgcggatgaagctaagatgcgctttgcgcacatc
gacggtgatcatttaactatgttgaacgtctatcacgcatttaaacagaacatggaagac
ccacagtggtgttacgataattttgtaaattaccgttcaatgaaatcggcagacaatgtg
cggcaacaactttcccgcataatggatcgtttcaatctaaagcgaacttccacggagttc
acctcaaaagactactatgttaatattcggaaagcgctcattagcggttttttcatgcag
attgcccatttggaacgcacaggacactaccagactataaaagataaccaagttgtacaa
ttacacccttctacgtgtttagaccacaaaccggagtgggttatttacaacgaatttgtt
ttgaccactaaaaattatatacgaacctgcaccgatgtcaaaccggaatggctgattaag
gttgccccgtcttattacgatatgagtaactttccggaaggtccggcaaaaagacaactt
gaacagattatcaaccgcctcgagagtcgggaatatcgcaattga
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