Daphnia magna (water flea): 116917035
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Entry
116917035 CDS
T07514
Name
(RefSeq) LOW QUALITY PROTEIN: protein SMG5
KO
K11125
protein SMG5
Organism
dmk
Daphnia magna (water flea)
Pathway
dmk03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dmk00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
116917035
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dmk03019
]
116917035
03032 DNA replication proteins [BR:
dmk03032
]
116917035
Messenger RNA biogenesis [BR:
dmk03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
116917035
mRNA cycle factors
Common to processing body (P body) and stress granule
116917035
DNA replication proteins [BR:
dmk03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
116917035
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
PIN_4
EST1
Motif
Other DBs
NCBI-GeneID:
116917035
NCBI-ProteinID:
XP_032778280
LinkDB
All DBs
Position
LG2:17708919..17712399
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AA seq
807 aa
AA seq
DB search
MADKNLNLKARVPSSTSNDTIKKLIYSASILVKQLDSAVVKAKACRDLFTPEVIELRSQL
SYLCVKSMGADPLQCRRRAEELLWKKCYYDVITSAKINGKKSPLSSMEKLFIGNHIEAGI
VKFTELMQDVWRRLEDMDPSLKLQLNVLPLLEVKYQNYELSKETREDLMESAQKILVWLG
DLSRYRNDLEISNSVITSERFYHQAILFNSNTGLPYNQLGTLTSHDPSRGFESIFYYTRS
MKASKHFPGAEPNLKALLARLVTNEDKLISAFSQLFPKLVFVVKEDTTFEVSQLCQVTLG
EIQKRLGSSENGSCNQLMDLASSVMMCTLTPTFATNNSQTAAIAFCCSLFAHVLNRFQEI
FHMTSRDASYANGNQAHDLKYLDPNAKEEMVDELSDEEEEESKRAKLRRRKVASGSSDQE
FSEEELFLDSNSEQESEDDEVLSDSGFHSAEAKVEPLLEIPHEATRILPIFKLLTDWFRV
NVEIVQVSNQTIRKIWSTLADILNVFKRCQREIVTHYGTVPLEEDWKFYGVNSMSLVHAQ
IDFESPPAPSDVLILNSIRIERILQFGNWLASQDNEKGFQVVNGIYTCPAEAVGDKSEGS
GAKADLVMRNMAHLWLKSEVQELERRLSPQQKRKKKTSFDFSGLSYVYLVPDVSALSNFT
YLIKQVIKSQKLIIVVPDIVISEMDQLKRESAPVRECIRWLESCFRTGNRFIRAQRQNEH
QVIPLLTYPKRKDKAHWTLFQILECCHYLDTNQRNVYKTSQNSPIVLFLTGDPVGETEQQ
TRAICNSIGVEYKFADSLMRKSKTKKR
NT seq
2424 nt
NT seq
+upstream
nt +downstream
nt
atggcagacaagaaccttaatttaaaggcgagagtgccgtcgtcaaccagtaacgatacc
attaaaaaactcatttattcagcttcaatattggtcaaacagttagactcggctgttgtt
aaagcaaaagcatgcagagatttattcactcctgaagttattgagcttcgaagccaactt
tcttatctctgtgttaaatcaatgggagctgatcctctgcaatgtagacgtcgtgctgaa
gaacttctctggaagaagtgctactatgatgtgataacgtctgccaaaatcaatggaaag
aaatcccctctttcttcaatggaaaaacttttcattggaaaccatattgaggctgggatt
gtaaagtttactgaacttatgcaagatgtgtggcggaggcttgaagatatggatccttct
ttgaagcttcaactcaatgtgctaccactccttgaggtgaagtaccaaaattatgaatta
tcaaaagagaccagggaagacctaatggaatctgctcaaaagattttggtttggctggga
gatttgtcacgttatagaaatgatctggagatttccaacagtgttattacgtcggaacgc
ttttatcaccaggcaattcttttcaattccaatactggtctcccatacaaccaacttggg
actttaacaagtcatgatccatcaagaggatttgaatccatattttactatacaagaagc
atgaaagcttcaaaacattttcctggtgccgaacctaacttgaaggctttattagctcgc
cttgttacgaacgaagacaaattgatatccgcgttttcccagctatttccgaaattagtc
tttgttgtcaaagaagacacaacgtttgaagtgagccaactttgccaggtaacattaggc
gaaatccaaaagagacttggaagtagcgaaaatggcagctgtaaccaactcatggattta
gcttcatccgtgatgatgtgcacgttaacccctacgttcgccacgaataacagtcaaaca
gcggccatcgccttttgttgctctttgtttgctcacgtgctaaataggtttcaagagatt
ttccacatgacgtccagagatgcctcctacgcaaatggaaaccaagcacatgatctaaag
tacttagatcctaatgccaaagaagagatggttgatgaattgagtgacgaagaggaagaa
gaaagtaagcgagcgaaattaagaaggcgaaaagttgcgtctggatcttccgatcaggaa
ttctcagaggaagagttatttttggatagtaattcagaacaggaatctgaagatgacgaa
gtgctatctgattcggggtttcattctgcagaagccaaagttgaacctcttctggaaatc
ccacacgaagctacacgtattttacctatttttaaactcttgactgattggttcagagtc
aatgttgaaattgttcaagtatcaaaccaaacgataagaaaaatttggtcaacgcttgct
gacatactcaacgtgtttaagcggtgtcaacgagaaattgtcactcattacggcacagtt
cctttagaagaggattggaagttctatggagtgaactccatgagcttagtgcatgctcag
atcgattttgagtctcctcctgcaccgtccgacgttttaattttgaattctattcgaatt
gaaagaatccttcagtttggtaactggttagcaagtcaagacaacgagaaaggattccag
gtggttaatgggatttacacgtgtccggctgaagcagtgggtgataaatcagaaggttcg
ggcgccaaagcggatcttgtcatgagaaatatggcccacttatggttgaaatcggaagtc
caagagcttgaacgaaggctctctcctcaacagaaacgcaaaaagaaaacaagctttgat
ttttccggtttatcgtatgtctatctagtaccggacgtctcagctctctcaaacttcacc
taccttataaagcaagtgatcaaaagccaaaaactgataatagtggtgccggacattgtc
atctcagaaatggatcaacttaaacgagaaagtgcacctgttcgggaatgcatccgctgg
ttggaatcctgctttcgcaccggcaatcgttttatcagagcccaacgtcagaacgagcat
caagttatcccgctgttaacttacccaaaacgtaaagataaggcccactggacacttttc
cagatactggagtgttgccattacctggacacaaaccaacgaaatgtctataaaactagc
cagaattcccctatcgtcctgttcttgactggcgatccggtcggagaaacagaacaacag
actagggcaatttgtaattcgattggcgtggaatataaatttgctgattcgttaatgaga
aaaagcaaaaccaaaaaacgctaa
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