Daphnia magna (water flea): 116917082
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Entry
116917082 CDS
T07514
Name
(RefSeq) LOW QUALITY PROTEIN: DNA topoisomerase 3-alpha
KO
K03165
DNA topoisomerase III [EC:
5.6.2.1
]
Organism
dmk
Daphnia magna (water flea)
Pathway
dmk03440
Homologous recombination
dmk03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
dmk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
116917082
03460 Fanconi anemia pathway
116917082
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dmk03032
]
116917082
03400 DNA repair and recombination proteins [BR:
dmk03400
]
116917082
Enzymes [BR:
dmk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
116917082
DNA replication proteins [BR:
dmk03032
]
Eukaryotic type
DNA Topoisomerases
116917082
DNA repair and recombination proteins [BR:
dmk03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Bloom's syndrome complex (BTR)
116917082
FA (Fanconi anemia) pathway
116917082
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_GRF
Toprim
Zn_ribbon_Top1
zf-CCHC
Motif
Other DBs
NCBI-GeneID:
116917082
NCBI-ProteinID:
XP_032778336
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Position
LG2:complement(15946178..15950623)
Genome browser
AA seq
1071 aa
AA seq
DB search
MLLFPRLKLFPRSKQVQFNVVVFTRCCETYAKLANTCKMVQVLNVAEKNDAAKNIAELLS
RGRMNRREGKSKFNKIYEFEHNLFNQAVKMVVTSVSGHLLSSDFVGNYKKWQGINPVALF
EAPIHKFCSEDYQNIKRTLEDETKKSKYLIIWTDCDREGENIGYEIIQVCQAIKPNIGVF
RAKFSEITYQSVARALQNLGPPNKNVSDAVDVRIELDLRIGAAFTRFQTLRLQKVFPNSL
GQSMISYGSCQFPTLGFIVERYRAIEDFVDEKFWKLKVVWELNEEERVEFLWKRHHLFNQ
TVVQILLEKCLENPEADIVKVQTKNKSKWRPLPLDTVELEKLASRKLRINAKETMKIAEK
LYTQGYISYPRTETNIFPKELDLNPLVQCQTVDPSWGGFAQRVLDEGLNPRQGKKSDQAH
PPIHPTKYAGNLANENERKLYEFIVRHFLACVSKDAQGYETVAEIQIQEEGFVASGLQIV
ARNYLEVYPYERWSDRSLPLLNQGEQFTPTSITMEEGATCAPQLLSEADLISLMEKHGIG
TDATHADHIETIKARQYAGVQADGRFLPCSLGMGLVQGYDAMGIALSKPNLRAELEADLK
RVCDGERSPNEVLREQIDRYRQVFVQAMEQVTKIDEALSTFFDEERQEAPAPYPDTGLDG
NTSYCKCPSCNLDITLRRKKDNNGFFFSCMGYPQCKNAIWLPTTVQQVEIDAQTCTACPS
HPPLVRFKFNPGAYAPFYPDTHRCCIGGCDPNFMELLGIRPLVSQPRNQNNPQSNNTRTA
NESRNSSGYASGSQSFASSANSTRSSGVGIPPPRPQAQPRPATSSNTRIVSGSSNRNTRQ
PAPPAAPAANQSNASSQPYFRQPMPLPQRPENNSDTVIVCNCSQDAMLLTVRKEGPNTGR
QFYKCAKQQDGCNFFLWADTPAPVPSSSEAGEATFRQPAVRNQPPDGGDSETCCYCDGGR
EPATIRTTQKPGPNCGRQFYCCGKPREVQCKFFEWVDDNGASGGGFDQGPQEAFGRGGAG
SSRGTISSRGRGRGRGRGSSNESSATGERKTRKCGNCGQEGHTRNRCPDIE
NT seq
3216 nt
NT seq
+upstream
nt +downstream
nt
atgttattatttcctcgtttgaaattgtttccacggagtaaacaagttcagtttaatgtt
gtagtgtttactagatgttgtgaaacgtatgccaaattggcaaacacttgtaagatggtt
caggtgcttaatgtcgcagagaaaaatgatgctgccaaaaatattgcagaactactttct
cgcggtcgcatgaaccgcagagaaggaaaaagcaaattcaacaaaatctatgagtttgaa
cataatctttttaaccaagctgtaaaaatggtagtcacctcggtatctggccatctgttg
tcttcagactttgttggaaattacaagaaatggcaagggataaatcccgttgccctgttt
gaagcaccaatccacaaattttgttctgaagattatcaaaatattaaaagaaccttagaa
gatgaaaccaaaaagagtaaatatttgattatttggacagattgtgatagagaaggtgag
aacattggctatgaaataatccaagtgtgtcaagcaattaagcccaatattggggtgttt
agagcaaagttttctgaaattacatatcagtcagtagcacgggctctgcagaatttgggc
cctcctaataaaaatgtcagtgatgccgttgatgtaagaattgagcttgatcttagaatt
ggagctgctttcacaaggtttcagactctcagacttcaaaaagttttccccaacagtctt
ggacaatccatgataagttacggatcttgtcagttccctacattaggttttatcgtcgag
cgctacagagccattgaggactttgtcgatgagaaattttggaaactgaaggttgtctgg
gaactcaacgaagaagaacgcgtggaatttctctggaaaagacaccatttattcaaccag
acagttgtgcaaattcttcttgaaaagtgtctggagaatcctgaagctgacatcgtcaag
gttcaaacaaagaacaaaagcaaatggagaccgttaccattggatactgttgaacttgaa
aagctagcgtccaggaaattgcggatcaacgccaaagaaaccatgaagattgctgaaaaa
ctgtacactcaagggtacatcagttatccccgtactgaaacaaatatatttcccaaagaa
ttagatctcaatcccctggttcaatgtcagacggttgatccgtcatggggaggattcgca
caacgtgtactggacgaaggattgaatcctcgccaaggcaaaaaatctgatcaggcccat
cctccgatccatccgacaaaatatgcaggaaatttggctaacgagaacgaacgtaaactt
tacgagtttatcgtccgccatttcttagcctgcgtcagcaaagatgcccaaggttatgaa
acggttgcagaaattcaaattcaagaagaaggttttgttgccagcggattgcaaatagtt
gcaagaaactatttggaagtatatccctacgagcgatggagtgatcgtagtcttcctctg
ctcaaccaaggcgaacaattcactccaacatcgataaccatggaggagggcgcgacttgt
gcacctcaactgctaagcgaagctgacctgatttcgctgatggaaaaacatggtattggt
acagacgccactcacgccgatcatattgagacgatcaaagcacgacagtacgctggtgtg
caagccgatggacgcttcttaccctgttccttgggtatggggctcgtacaaggttatgac
gccatgggcatcgctctttcgaagccaaatcttagagctgaactagaagctgatttgaaa
agggtgtgtgacggagaaagaagtccgaatgaagttctgagagagcagattgatagatac
cgacaggtctttgtgcaagccatggagcaggtgacaaaaatcgatgaagccctttcgaca
ttcttcgacgaagaacgacaagaagcgccagctccttatcctgacacgggtctggatgga
aacacaagttactgcaaatgtccatcttgcaacttggacatcactttgcgacgaaaaaag
gataataatgggttctttttctcttgtatggggtatcctcagtgtaaaaatgccatatgg
ttaccaactactgtacagcaagtagaaatcgatgcgcaaacgtgtacagcgtgcccatct
catccgcctctggtgcgttttaaattcaacccaggcgcttacgctccgttttatcctgat
actcatcgctgttgtattggtgggtgtgatcccaattttatggagcttctgggtattcgt
ccactggtatcgcagccacggaaccaaaataaccctcagtcaaataacacgagaacagca
aacgaatcgcgaaattcttctggttacgcatcaggatcgcaaagctttgcttcttcagca
aatagcacacgttcctctggcgtgggaattccgcctcccagacctcaagcccagcctcgt
ccagcaacttccagtaatactcgaattgtatccggttctagtaacagaaatacaagacaa
ccagctccaccagcggcccccgcagctaaccaatcaaatgcttcatcacagccgtatttc
cgtcaacccatgcctctgccacagaggcctgaaaacaacagtgataccgtgattgtgtgt
aattgtagccaagacgctatgctattgacggttcgaaaagaaggacccaacacaggacgg
cagttttataaatgtgcaaaacaacaggatggctgtaacttcttcctgtgggccgatact
cctgccccggttccttctagcagtgaagccggagaggcgacattccgccaaccagctgtc
cggaatcaaccgcctgatggtggtgactccgagacgtgctgttattgcgatggtggtcgc
gaacctgccacgataagaaccacgcaaaaaccaggcccgaattgtggacgtcagttttat
tgttgtggcaaaccccgtgaagtgcagtgcaagtttttcgagtgggtggacgacaacggc
gctagtggaggtggattcgatcaaggccctcaagaagcattcggtagaggaggagcagga
tccagccggggtaccattagttccagagggcgaggaagagggcgcggccgtggaagctca
aatgaatcgtccgccaccggagaaagaaaaacaagaaaatgcgggaattgcggtcaagaa
ggccataccaggaatcgttgtcctgatatcgaataa
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